Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   CXP43_RS18590 Genome accession   NZ_CP025308
Coordinates   3692335..3693024 (-) Length   229 a.a.
NCBI ID   WP_197535984.1    Uniprot ID   -
Organism   Bacillus velezensis strain Lzh-a42     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3687335..3698024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXP43_RS18555 (CXP43_18555) fliW 3687426..3687857 (-) 432 WP_003151399.1 flagellar assembly protein FliW -
  CXP43_RS18560 (CXP43_18560) - 3687887..3688456 (-) 570 WP_003151397.1 DUF6470 family protein -
  CXP43_RS18565 (CXP43_18565) flgL 3688547..3689464 (-) 918 WP_014419007.1 flagellar hook-associated protein FlgL -
  CXP43_RS18570 (CXP43_18570) flgK 3689476..3690993 (-) 1518 WP_014419008.1 flagellar hook-associated protein FlgK -
  CXP43_RS18575 (CXP43_18575) - 3691009..3691491 (-) 483 WP_003151394.1 flagellar protein FlgN -
  CXP43_RS18580 (CXP43_18580) flgM 3691506..3691772 (-) 267 WP_003151393.1 flagellar biosynthesis anti-sigma factor FlgM -
  CXP43_RS18585 (CXP43_18585) - 3691842..3692261 (-) 420 WP_014419009.1 TIGR03826 family flagellar region protein -
  CXP43_RS18590 (CXP43_18590) comFC 3692335..3693024 (-) 690 WP_197535984.1 ComF family protein Machinery gene
  CXP43_RS18595 (CXP43_18595) - 3693030..3693314 (-) 285 WP_014419011.1 late competence development ComFB family protein -
  CXP43_RS18600 (CXP43_18600) comFA 3693372..3694757 (-) 1386 WP_014419012.1 DEAD/DEAH box helicase Machinery gene
  CXP43_RS18605 (CXP43_18605) - 3694865..3695713 (-) 849 WP_003151387.1 DegV family protein -
  CXP43_RS18610 (CXP43_18610) degU 3695811..3696500 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  CXP43_RS18615 (CXP43_18615) degS 3696577..3697740 (-) 1164 WP_007407484.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 229 a.a.        Molecular weight: 25250.91 Da        Isoelectric Point: 7.7729

>NTDB_id=259999 CXP43_RS18590 WP_197535984.1 3692335..3693024(-) (comFC) [Bacillus velezensis strain Lzh-a42]
MNCLLCDSPISSSLTWRSLFSLAPEQEICSICSSQFEKIEGPVCSICGRPQESNEKCADCAARESKTEKCFLLRQNRSVY
LYNDAMKDSLARFKFRGDAKIIQAFERDFAAGFKAAYPSNTHTLIPIPLSGERLAERGFNQSELLASLLGMPVIFPLIRL
NNEKQSKKSKTERLSAEKKFSAAENSAEGMNVILIDDIYTTGATLHQAAEVLLTAGKASSVSSFTLIRS

Nucleotide


Download         Length: 690 bp        

>NTDB_id=259999 CXP43_RS18590 WP_197535984.1 3692335..3693024(-) (comFC) [Bacillus velezensis strain Lzh-a42]
CTGAATTGTTTATTGTGTGACTCACCAATTTCAAGTTCATTGACTTGGAGATCTCTGTTTTCTCTGGCGCCCGAGCAAGA
GATATGCAGCATATGCAGCAGCCAATTCGAAAAAATTGAAGGCCCCGTATGCAGTATATGCGGGAGGCCTCAGGAGTCAA
ATGAAAAATGCGCTGATTGTGCGGCCCGGGAATCAAAAACGGAAAAGTGCTTTTTGCTGCGGCAAAACCGTTCGGTATAT
TTGTATAATGATGCGATGAAGGACTCATTGGCCCGGTTTAAATTCAGGGGTGATGCGAAAATCATTCAAGCATTTGAACG
TGACTTTGCTGCCGGCTTTAAAGCGGCATATCCATCAAATACACATACTCTCATCCCTATTCCGCTGAGCGGCGAACGGC
TGGCGGAACGCGGATTCAATCAATCCGAGCTGCTGGCCTCTCTGCTCGGAATGCCCGTCATTTTCCCCCTCATCCGACTG
AACAATGAAAAACAATCCAAAAAGAGCAAAACAGAAAGGCTGTCCGCAGAAAAAAAGTTTTCAGCAGCCGAAAACTCCGC
CGAAGGTATGAACGTCATCTTAATAGATGATATTTATACGACGGGCGCCACACTTCACCAAGCCGCCGAAGTCCTGCTGA
CAGCGGGTAAAGCGTCATCGGTCTCCTCTTTTACTTTAATCAGAAGCTAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(144-227)

Double zinc ribbon domain (DZR_2)

(2-61)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

60.352

99.127

0.598

Multiple sequence alignment