Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   CSC39_RS06945 Genome accession   NZ_CP030331
Coordinates   1152718..1153455 (-) Length   245 a.a.
NCBI ID   WP_000197673.1    Uniprot ID   -
Organism   Escherichia coli strain AR_452     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1147718..1158455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CSC39_RS06910 (CSC39_1168) yfiL 1147848..1148241 (-) 394 Protein_1101 DUF2799 domain-containing protein -
  CSC39_RS06915 (CSC39_1169) aroF 1148451..1149521 (+) 1071 WP_001168054.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  CSC39_RS06920 (CSC39_1170) tyrA 1149532..1150653 (+) 1122 WP_000225217.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  CSC39_RS06925 (CSC39_1171) pheA 1150696..1151856 (-) 1161 WP_000200098.1 bifunctional chorismate mutase/prephenate dehydratase -
  CSC39_RS06930 pheL 1151955..1152002 (-) 48 WP_001386991.1 pheA operon leader peptide PheL -
  CSC39_RS06935 (CSC39_1172) raiA 1152106..1152447 (-) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  CSC39_RS06945 (CSC39_1173) comL 1152718..1153455 (-) 738 WP_000197673.1 outer membrane protein assembly factor BamD Machinery gene
  CSC39_RS06950 (CSC39_1174) rluD 1153590..1154570 (+) 981 WP_000079107.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CSC39_RS06955 (CSC39_1175) yfiH 1154567..1155298 (+) 732 WP_000040115.1 purine nucleoside phosphorylase YfiH -
  CSC39_RS06960 (CSC39_1176) clpC 1155428..1158001 (+) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27843.47 Da        Isoelectric Point: 7.1587

>NTDB_id=259970 CSC39_RS06945 WP_000197673.1 1152718..1153455(-) (comL) [Escherichia coli strain AR_452]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFSDFSKLVRGYPKSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=259970 CSC39_RS06945 WP_000197673.1 1152718..1153455(-) (comL) [Escherichia coli strain AR_452]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCGCAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAGGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCAAAAAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTACTATACAGA
ACGTGGCGCATGGGTTGCCGTCGTTAACCGCGTAGAAGGAATGTTGCGCGACTACCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.115

99.592

0.38
  comL Neisseria gonorrhoeae MS11

37.295

99.592

0.371

Multiple sequence alignment