Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   RXYL_RS10955 Genome accession   NC_008148
Coordinates   2192214..2193605 (-) Length   463 a.a.
NCBI ID   WP_011565136.1    Uniprot ID   Q1AU06
Organism   Rubrobacter xylanophilus DSM 9941     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2187214..2198605
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  RXYL_RS10930 (Rxyl_2173) cysS 2187237..2188649 (-) 1413 WP_011565131.1 cysteine--tRNA ligase -
  RXYL_RS10935 (Rxyl_2174) - 2188646..2189941 (-) 1296 WP_011565132.1 glutamate--tRNA ligase -
  RXYL_RS10940 (Rxyl_2175) ispF 2189931..2190428 (-) 498 WP_011565133.1 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase -
  RXYL_RS10945 (Rxyl_2176) ispD 2190436..2191131 (-) 696 WP_011565134.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  RXYL_RS10950 (Rxyl_2177) disA 2191132..2192217 (-) 1086 WP_011565135.1 DNA integrity scanning diadenylate cyclase DisA -
  RXYL_RS10955 (Rxyl_2178) radA 2192214..2193605 (-) 1392 WP_011565136.1 DNA repair protein RadA Machinery gene
  RXYL_RS10960 (Rxyl_2179) - 2193726..2196230 (-) 2505 WP_011565137.1 ATP-dependent Clp protease ATP-binding subunit -
  RXYL_RS10965 (Rxyl_2180) lysS 2196614..2198092 (-) 1479 WP_011565138.1 lysine--tRNA ligase -

Sequence

Protein


Download         Length: 463 a.a.        Molecular weight: 48354.60 Da        Isoelectric Point: 5.9532

>NTDB_id=25993 RXYL_RS10955 WP_011565136.1 2192214..2193605(-) (radA) [Rubrobacter xylanophilus DSM 9941]
MASRTLYVCSSCGHEEPKWLGRCPDCGAWSTFVEEVRGERKASGFAARAREAGSRAAAGKTLRLDEVGGGEAEGRIGTGI
AELDRILGGGLVPGSLVLVGGEPGVGKSTLLLQVMGRLGGRCLMVSGEESPRQVAMSARRLGVAGSGFEVLAETDVDVIE
ATILRGRPEVVVVDSIQTLYSPELAGAPGGVGQVRECAARLMRLAKAEGIAVVLVGHVTKEGSIAGPRVLEHMVDTVLQF
EGDRFQAFRILRALKNRFGSTNEVGVFEMTSRGMEEVEDPSAFFLSRREAEVPPGVATVCLLEGTRPMLVEIESLVAPSP
LAVPRRVARGLDGGRVNMLCAVLSRRAGLALGSQDVYVNVTGGVRVEEPAADLGAALAIASALRDRPLERGTACFGEVGL
TGDVRFVPGAGRRLRELIKLGFDRIIIPEGSSGGAPGGGAASGRGVNVVEVRTLEEAVAVALL

Nucleotide


Download         Length: 1392 bp        

>NTDB_id=25993 RXYL_RS10955 WP_011565136.1 2192214..2193605(-) (radA) [Rubrobacter xylanophilus DSM 9941]
ATGGCTTCGAGAACCCTGTACGTGTGCTCCAGCTGCGGGCACGAGGAGCCCAAGTGGCTCGGGCGCTGCCCGGACTGCGG
GGCGTGGAGCACCTTTGTAGAGGAGGTGCGCGGCGAGCGGAAGGCCTCGGGCTTTGCCGCCCGGGCCCGGGAGGCGGGCT
CCCGGGCCGCCGCCGGGAAGACCCTGCGGCTCGACGAGGTCGGCGGGGGGGAGGCCGAGGGCCGGATCGGCACCGGCATA
GCGGAGCTCGACCGCATCCTGGGCGGCGGGCTCGTGCCGGGCTCGCTCGTGCTGGTGGGCGGAGAGCCGGGGGTGGGCAA
GAGCACGCTGTTGTTGCAGGTGATGGGCCGGCTCGGGGGCCGGTGCCTGATGGTGAGCGGCGAGGAGTCGCCCCGGCAGG
TGGCCATGAGCGCCCGGCGCCTCGGGGTGGCCGGCTCCGGCTTCGAGGTGCTCGCGGAGACCGACGTGGACGTCATAGAG
GCCACCATCCTCCGCGGGCGGCCGGAGGTGGTGGTCGTCGACTCCATCCAGACGCTGTACTCGCCGGAGCTCGCCGGGGC
TCCCGGGGGGGTGGGGCAGGTGCGGGAGTGCGCGGCCCGCCTGATGCGGCTCGCCAAGGCCGAGGGGATCGCCGTCGTCC
TCGTCGGCCACGTTACCAAGGAGGGTTCCATCGCCGGGCCGCGGGTGCTGGAGCACATGGTGGACACCGTGCTCCAGTTC
GAGGGCGACCGGTTCCAGGCCTTCCGCATCCTGCGGGCCCTCAAGAACCGCTTCGGTTCCACGAACGAGGTGGGGGTGTT
CGAGATGACCTCCCGCGGGATGGAGGAGGTGGAGGACCCTTCGGCGTTCTTTCTGAGCCGCCGCGAGGCGGAGGTGCCGC
CCGGGGTGGCCACCGTGTGCCTGCTGGAGGGGACGCGCCCCATGCTCGTGGAGATAGAGAGCCTGGTGGCCCCGAGCCCG
CTCGCCGTCCCGCGCCGGGTGGCCCGGGGCCTCGACGGCGGGCGGGTGAACATGCTGTGCGCGGTGCTCTCGCGCCGGGC
CGGGCTCGCGCTCGGCTCCCAGGACGTCTACGTCAACGTGACCGGTGGGGTGCGGGTCGAGGAGCCGGCGGCCGACCTCG
GGGCCGCCCTGGCCATAGCCTCGGCGCTGAGGGACAGGCCGCTGGAGCGCGGGACGGCCTGCTTCGGGGAGGTCGGGCTC
ACCGGGGATGTGAGGTTCGTCCCCGGCGCCGGGCGCAGGCTGCGCGAACTGATCAAGCTGGGCTTCGATCGTATAATAAT
CCCCGAGGGTTCCTCCGGCGGCGCGCCGGGCGGCGGCGCCGCTTCCGGCAGAGGGGTAAACGTTGTAGAGGTGAGGACGC
TCGAAGAGGCTGTGGCGGTGGCGTTGCTGTGA

Domains

Predicted by InterproScan.

Subunit ChlI of Mg-chelatase (ChlI)

(347-429)

AAA domain (AAA_25)

(76-222)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(7-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q1AU06

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

49.244

100

0.492
  radA Streptococcus pneumoniae Rx1

47.702

98.704

0.471
  radA Streptococcus pneumoniae D39

47.702

98.704

0.471
  radA Streptococcus pneumoniae TIGR4

47.702

98.704

0.471
  radA Streptococcus pneumoniae R6

47.702

98.704

0.471
  radA Streptococcus mitis NCTC 12261

47.484

98.704

0.469
  radA Streptococcus mitis SK321

49.423

93.521

0.462

Multiple sequence alignment