Detailed information    

insolico Bioinformatically predicted

Overview

Name   dprA   Type   Machinery gene
Locus tag   CXQ83_RS02960 Genome accession   NZ_CP025281
Coordinates   574790..575560 (+) Length   256 a.a.
NCBI ID   WP_002787385.1    Uniprot ID   -
Organism   Campylobacter coli strain YH503     
Function   ssDNA binding; loading RecA onto ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 569790..580560
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXQ83_RS02945 (CXQ83_02935) - 570666..572600 (-) 1935 WP_002776352.1 RNB domain-containing ribonuclease -
  CXQ83_RS02950 (CXQ83_02940) ilvC 572723..573745 (+) 1023 WP_002776360.1 ketol-acid reductoisomerase -
  CXQ83_RS02955 (CXQ83_02945) - 573748..574800 (+) 1053 WP_002787384.1 divergent polysaccharide deacetylase family protein -
  CXQ83_RS02960 (CXQ83_02950) dprA 574790..575560 (+) 771 WP_002787385.1 DNA-processing protein DprA Machinery gene
  CXQ83_RS02965 (CXQ83_02955) ruvX 575557..575937 (+) 381 WP_002776373.1 Holliday junction resolvase RuvX -
  CXQ83_RS02970 (CXQ83_02960) - 575948..576802 (+) 855 WP_370300696.1 RsmB/NOP family class I SAM-dependent RNA methyltransferase -
  CXQ83_RS02975 (CXQ83_02965) msrA 577025..577525 (-) 501 WP_002776375.1 peptide-methionine (S)-S-oxide reductase MsrA -
  CXQ83_RS02980 (CXQ83_02970) ppa 577573..578091 (-) 519 WP_002776378.1 inorganic diphosphatase -
  CXQ83_RS02985 (CXQ83_02975) - 578101..578676 (-) 576 WP_002781658.1 adenylate kinase -
  CXQ83_RS02990 (CXQ83_02980) aspS 578673..580424 (-) 1752 WP_002787386.1 aspartate--tRNA ligase -

Sequence

Protein


Download         Length: 256 a.a.        Molecular weight: 28789.21 Da        Isoelectric Point: 5.0727

>NTDB_id=259824 CXQ83_RS02960 WP_002787385.1 574790..575560(+) (dprA) [Campylobacter coli strain YH503]
MQSELPSAYLELFKELKNPPKKLYYKGNLKLLEQRKIAIIGSRRMSTYTKNCVFELSNLLKNSKISVVSGGALGVDISAS
MAAMPSTIGVFANGLDEIYPRSNEKIIKQIYENALALSENESYYKPKPYDFLLRNRLIVALSEAVVVAQADLQSGSMQSA
RLALELNKPLYVLPQRKNESDGTNLLLQEKNANLLLDFKEFASCFGVIEEEKDEFLDFCKQGVSVDEATQIYGEKVYEYE
LEGKISIEGLFIRVLV

Nucleotide


Download         Length: 771 bp        

>NTDB_id=259824 CXQ83_RS02960 WP_002787385.1 574790..575560(+) (dprA) [Campylobacter coli strain YH503]
ATGCAAAGTGAACTACCAAGCGCTTATCTAGAGCTTTTTAAAGAGTTGAAAAATCCTCCTAAAAAACTTTATTATAAAGG
AAATTTAAAACTCTTAGAACAAAGAAAGATAGCCATTATAGGCTCTAGGCGTATGAGCACTTACACTAAAAATTGCGTTT
TTGAGCTTTCAAATTTGCTTAAAAATTCAAAGATAAGTGTTGTAAGCGGAGGTGCTTTGGGTGTTGATATCAGTGCAAGT
ATGGCGGCTATGCCAAGCACTATAGGGGTTTTTGCCAATGGTCTTGATGAAATTTATCCTAGAAGCAATGAAAAAATTAT
AAAACAAATTTATGAAAATGCTTTGGCTTTAAGCGAAAACGAATCCTACTATAAGCCTAAGCCTTATGATTTTTTACTTA
GAAATAGACTGATTGTCGCTTTGAGTGAAGCCGTTGTTGTTGCGCAAGCAGATTTGCAAAGCGGCTCCATGCAAAGTGCA
AGACTTGCTTTGGAGCTTAATAAACCTTTATATGTTTTACCCCAACGCAAAAATGAAAGCGATGGGACAAATTTACTCTT
ACAAGAAAAAAATGCGAATTTGCTTTTAGATTTTAAAGAATTTGCAAGTTGTTTTGGGGTTATAGAAGAAGAAAAGGATG
AATTTTTAGACTTTTGTAAACAGGGCGTAAGCGTGGATGAGGCAACTCAAATTTATGGAGAAAAAGTCTATGAGTACGAG
CTTGAAGGAAAAATTTCCATAGAAGGTCTTTTTATAAGGGTTTTGGTATGA

Domains

Predicted by InterproScan.

DNA recombination-mediator protein A (DNA_processg_A)

(8-195)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dprA Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

76.953

100

0.77
  dprA Helicobacter pylori 26695

47.917

93.75

0.449

Multiple sequence alignment