Detailed information NTG0025972

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: STER_RS09735
• Genome accession: NC_008532
• Coordinates: 1842641..1843741 (+)
• Length: 366 a.a.
• NCBI ID: WP_002947786.1
• Uniprot ID: Q5LXI7
• Organism: Streptococcus thermophilus LMD-9
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1837641..1848741

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
STER_RS09710 (STER_1986)	pgsA	1838183..1838725 (-)	543	WP_011681759.1	CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase	-
STER_RS09715 (STER_1987)	-	1838738..1839595 (-)	858	WP_011681760.1	helix-turn-helix domain-containing protein	-
STER_RS09720 (STER_1988)	yfmH	1839654..1840931 (-)	1278	WP_011681761.1	EF-P 5-aminopentanol modification-associated protein YfmH	-
STER_RS09725 (STER_1989)	yfmF	1840933..1842183 (-)	1251	WP_011681762.1	EF-P 5-aminopentanol modification-associated protein YfmF	-
STER_RS09730 (STER_1990)	yaaA	1842261..1842638 (+)	378	WP_002947785.1	S4 domain-containing protein YaaA	-
STER_RS09735 (STER_1991)	recF	1842641..1843741 (+)	1101	WP_002947786.1	DNA replication/repair protein RecF	Machinery gene
STER_RS09740 (STER_1992)	guaB	1843910..1845391 (-)	1482	WP_011227627.1	IMP dehydrogenase	-
STER_RS09745 (STER_1993)	trpS	1845568..1846590 (-)	1023	WP_011681763.1	tryptophan--tRNA ligase	-
STER_RS09750 (STER_1994)	-	1847018..1847890 (+)	873	WP_011681764.1	YitT family protein	-

Sequence

Protein

• Length: 366 a.a.
• Molecular weight: 42173.29 Da
• Isoelectric Point: 8.3913

>NTDB_id=25972 STER_RS09735 WP_002947786.1 1842641..1843741(+) (recF) [Streptococcus thermophilus LMD-9]
MWLEKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide

• Length: 1101 bp

>NTDB_id=25972 STER_RS09735 WP_002947786.1 1842641..1843741(+) (recF) [Streptococcus thermophilus LMD-9]
ATGTGGCTTGAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCATCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACAGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACGACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: Q5LXI7

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	65.642	97.814	0.642
recF	Bacillus subtilis subsp. subtilis str. 168	42.935	100	0.432