Detailed information
Bioinformatically predicted
Overview
| Name | xcpV | Type | Machinery gene |
| Locus tag | CV094_RS01670 | Genome accession | NZ_CP025266 |
| Coordinates | 355701..356081 (-) | Length | 126 a.a. |
| NCBI ID | WP_000836911.1 | Uniprot ID | - |
| Organism | Acinetobacter baumannii isolate SMC_Paed_Ab_BL01 | ||
| Function | pseudopilus assembly (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 350701..361081
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CV094_RS01640 (CV094_01640) | tadA | 350819..351322 (-) | 504 | WP_000033178.1 | tRNA adenosine(34) deaminase TadA | - |
| CV094_RS01645 (CV094_01645) | - | 351329..352453 (-) | 1125 | WP_001983908.1 | enoyl-CoA hydratase/isomerase family protein | - |
| CV094_RS01650 (CV094_01650) | ung | 352450..353163 (-) | 714 | WP_001177528.1 | uracil-DNA glycosylase | - |
| CV094_RS01655 (CV094_01655) | - | 353214..353810 (-) | 597 | WP_000908452.1 | 6-pyruvoyl trahydropterin synthase family protein | - |
| CV094_RS01660 (CV094_01660) | gspK | 354041..355000 (-) | 960 | WP_000301476.1 | type II secretion system minor pseudopilin GspK | - |
| CV094_RS01665 (CV094_01665) | xcpW | 355000..355701 (-) | 702 | WP_000594589.1 | type II secretion system minor pseudopilin GspJ | Machinery gene |
| CV094_RS01670 (CV094_01670) | xcpV | 355701..356081 (-) | 381 | WP_000836911.1 | type II secretion system minor pseudopilin GspI | Machinery gene |
| CV094_RS01675 (CV094_01675) | - | 356071..356625 (-) | 555 | WP_000841373.1 | type II secretion system protein | - |
| CV094_RS01680 (CV094_01680) | - | 356635..357243 (-) | 609 | WP_000375838.1 | TetR/AcrR family transcriptional regulator | - |
| CV094_RS01685 (CV094_01685) | - | 357281..358054 (-) | 774 | WP_000497298.1 | TatD family hydrolase | - |
| CV094_RS01690 (CV094_01690) | - | 358072..358413 (-) | 342 | WP_001183024.1 | PilZ domain-containing protein | - |
| CV094_RS01695 (CV094_01695) | - | 358425..359405 (-) | 981 | WP_001075411.1 | DNA polymerase III subunit delta' | - |
| CV094_RS01700 (CV094_01700) | kdsB | 359417..360178 (-) | 762 | WP_000680697.1 | 3-deoxy-manno-octulosonate cytidylyltransferase | - |
Sequence
Protein
Download Length: 126 a.a. Molecular weight: 13975.20 Da Isoelectric Point: 9.8004
>NTDB_id=259648 CV094_RS01670 WP_000836911.1 355701..356081(-) (xcpV) [Acinetobacter baumannii isolate SMC_Paed_Ab_BL01]
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
MKSKGFTLLEVMVALAIFAVAAVALTKVAMQYTQSTSNAILRTKAQFVAMNEVAMMEINQEWLQGTQSKQVTSQGETWQI
DKSAQSTISPNVQKIDLQVSLYDPDKGKVQNGITHMVFFNYPVKAK
Nucleotide
Download Length: 381 bp
>NTDB_id=259648 CV094_RS01670 WP_000836911.1 355701..356081(-) (xcpV) [Acinetobacter baumannii isolate SMC_Paed_Ab_BL01]
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
ATGAAATCTAAAGGCTTTACCCTCTTAGAAGTTATGGTTGCTTTGGCAATCTTTGCAGTCGCAGCTGTCGCTTTAACTAA
AGTGGCAATGCAGTACACGCAGTCCACTTCAAATGCAATTTTGCGAACCAAAGCTCAATTTGTAGCAATGAATGAAGTTG
CTATGATGGAGATTAATCAAGAATGGTTGCAAGGAACCCAGAGTAAGCAAGTAACTTCCCAAGGTGAAACTTGGCAAATT
GATAAGTCAGCTCAATCTACTATTAGCCCGAATGTTCAAAAAATTGATTTACAAGTGAGTTTGTATGATCCGGATAAGGG
AAAAGTACAAAATGGCATTACTCATATGGTCTTTTTTAATTATCCAGTGAAAGCAAAATAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| xcpV | Acinetobacter baumannii D1279779 |
100 |
100 |
1 |