Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   DQ228_RS09910 Genome accession   NZ_CP030250
Coordinates   1922408..1923508 (+) Length   366 a.a.
NCBI ID   WP_024704278.1    Uniprot ID   -
Organism   Streptococcus thermophilus strain CS20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1917408..1928508
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQ228_RS09885 pgsA 1917949..1918491 (-) 543 WP_024704275.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DQ228_RS09890 - 1918504..1919361 (-) 858 WP_011681760.1 helix-turn-helix domain-containing protein -
  DQ228_RS09895 yfmH 1919420..1920697 (-) 1278 WP_024704276.1 EF-P 5-aminopentanol modification-associated protein YfmH -
  DQ228_RS09900 yfmF 1920699..1921949 (-) 1251 WP_024704277.1 EF-P 5-aminopentanol modification-associated protein YfmF -
  DQ228_RS09905 yaaA 1922028..1922405 (+) 378 WP_101415717.1 S4 domain-containing protein YaaA -
  DQ228_RS09910 recF 1922408..1923508 (+) 1101 WP_024704278.1 DNA replication/repair protein RecF Machinery gene
  DQ228_RS09915 guaB 1923677..1925158 (-) 1482 WP_011227627.1 IMP dehydrogenase -
  DQ228_RS09920 trpS 1925335..1926357 (-) 1023 WP_011681763.1 tryptophan--tRNA ligase -
  DQ228_RS09925 - 1926785..1927657 (+) 873 WP_011227628.1 YitT family protein -

Sequence

Protein


Download         Length: 366 a.a.        Molecular weight: 42172.35 Da        Isoelectric Point: 9.2442

>NTDB_id=259581 DQ228_RS09910 WP_024704278.1 1922408..1923508(+) (recF) [Streptococcus thermophilus strain CS20]
MWLKKIDIQHFRNYSEASVSFSPHLNIFLGRNAQGKTNILEAIYFLALTRSHRTHLDKELIQFQQNSLKLNGIVHRHSGN
LPLEINLSNKGRVTKVNYLKQAKLSDYIGHMTVVLFAPEDLQLVKGSPSLRRKFIDIDLGQIKPVYLSDLSNYNHVLKQR
NAYLKSTDKVDINFLSVLDEQLADFGARVIKHRLEFIKQLEEEADGHHSILSNQIERLKISYESNIPIQNSKDIREAFLT
TLNQNHKRDIFKKNTGVGPHRDDLKFYINDMNASFGSQGQQRSLILSLKMAEIALIKKVTEEFPILLLDDVMSELDNHRQ
LKLLESIDEEVQTFMTTTSLDHLSNLPPNLKTFLVKNGTIYEKQVD

Nucleotide


Download         Length: 1101 bp        

>NTDB_id=259581 DQ228_RS09910 WP_024704278.1 1922408..1923508(+) (recF) [Streptococcus thermophilus strain CS20]
ATGTGGCTTAAAAAAATTGATATTCAACACTTTAGAAATTATTCTGAAGCCTCTGTGAGCTTTTCACCACATCTCAATAT
TTTTCTTGGACGAAATGCCCAAGGAAAAACAAATATTCTTGAAGCTATCTATTTTCTAGCCTTAACACGTAGTCATCGGA
CCCATTTAGACAAGGAACTAATTCAGTTCCAGCAAAATAGTCTTAAACTAAACGGCATCGTGCATCGTCATAGTGGAAAC
CTACCTCTGGAAATCAACTTATCTAATAAGGGACGAGTTACAAAGGTCAACTACCTCAAGCAGGCAAAATTATCTGATTA
TATAGGTCACATGACGGTGGTACTCTTTGCTCCTGAGGATTTACAACTTGTAAAAGGATCTCCAAGTCTAAGACGTAAAT
TTATAGATATTGATTTAGGACAGATTAAGCCTGTTTACCTCTCAGACCTATCAAATTACAATCATGTTCTTAAGCAGCGT
AATGCCTATCTCAAATCTACTGACAAGGTAGACATTAATTTCCTCTCAGTTTTAGATGAACAGCTTGCCGATTTTGGAGC
ACGAGTTATTAAACATAGACTAGAATTTATCAAGCAATTAGAAGAGGAAGCTGATGGACATCATAGTATTCTCTCAAATC
AGATTGAGCGTCTTAAAATTTCCTATGAATCTAACATCCCAATACAAAATAGCAAAGATATTCGAGAAGCATTTTTAACT
ACATTAAACCAGAATCACAAAAGAGATATCTTCAAAAAGAATACCGGTGTTGGTCCACATAGGGATGATTTAAAATTTTA
CATTAATGACATGAACGCATCTTTCGGTAGTCAAGGGCAGCAACGTAGCCTTATTCTTTCATTAAAAATGGCTGAGATTG
CTCTAATTAAAAAAGTGACAGAGGAATTTCCTATTCTTCTCCTTGACGATGTCATGAGTGAACTTGACAATCACCGTCAA
CTTAAATTGCTAGAAAGTATTGATGAAGAGGTCCAAACTTTCATGACGACAACCTCACTCGATCATCTTAGCAACCTACC
ACCCAATTTAAAGACCTTCTTAGTTAAGAATGGTACTATTTATGAAAAGCAAGTCGATTAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

65.642

97.814

0.642
  recF Bacillus subtilis subsp. subtilis str. 168

42.935

100

0.432