Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DQ228_RS03025 Genome accession   NZ_CP030250
Coordinates   567738..568334 (+) Length   198 a.a.
NCBI ID   WP_011225694.1    Uniprot ID   P96053
Organism   Streptococcus thermophilus strain CS20     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 562738..573334
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DQ228_RS03000 - 562873..563085 (+) 213 WP_011680924.1 alpha/beta fold hydrolase -
  DQ228_RS03005 - 563333..563524 (+) 192 WP_011227003.1 alpha/beta fold hydrolase -
  DQ228_RS03010 - 563698..564552 (+) 855 WP_024009803.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  DQ228_RS03015 - 564556..565392 (+) 837 WP_014608120.1 NAD(P)H-hydrate dehydratase -
  DQ228_RS03020 pbp2b 565514..567628 (+) 2115 WP_232979715.1 penicillin-binding protein PBP2B -
  DQ228_RS03025 recR 567738..568334 (+) 597 WP_011225694.1 recombination mediator RecR Machinery gene
  DQ228_RS03030 - 568475..569273 (+) 799 Protein_565 PRD domain-containing protein -
  DQ228_RS03035 ybeY 569493..569990 (+) 498 WP_002950224.1 rRNA maturation RNase YbeY -
  DQ228_RS03040 - 569971..570375 (+) 405 WP_002946201.1 diacylglycerol kinase family protein -
  DQ228_RS03045 era 570394..571293 (+) 900 WP_002950226.1 GTPase Era -
  DQ228_RS03050 mutM 571340..572161 (+) 822 WP_011225698.1 DNA-formamidopyrimidine glycosylase -
  DQ228_RS03055 coaE 572158..572751 (+) 594 WP_014621355.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21767.98 Da        Isoelectric Point: 4.5326

>NTDB_id=259515 DQ228_RS03025 WP_011225694.1 567738..568334(+) (recR) [Streptococcus thermophilus strain CS20]
MLYPTPIAKLIDSFSKLPGIGAKTATRLAFYTISMSDEDVNDFAKNLLAAKRELTYCSVCGRLTDDDPCIICTDETRDRT
KILVVEDSKDVSAMEKIQEYRGLYHVLQGLISPMNGVGPDDINLKSLITRLMDSEVDEVIIATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=259515 DQ228_RS03025 WP_011225694.1 567738..568334(+) (recR) [Streptococcus thermophilus strain CS20]
ATGCTTTATCCTACTCCAATTGCTAAACTGATTGATAGTTTTTCAAAACTTCCAGGAATTGGGGCTAAGACGGCGACACG
TCTGGCTTTCTATACCATTAGCATGTCTGATGAAGATGTCAATGATTTTGCAAAAAATCTTTTAGCAGCAAAACGTGAGT
TGACCTATTGTTCAGTTTGTGGTCGCTTGACTGATGATGACCCATGTATTATTTGTACGGATGAAACTAGAGACCGTACT
AAGATTTTGGTTGTTGAGGACTCCAAAGATGTTTCTGCTATGGAAAAGATTCAGGAATATCGTGGTCTCTACCATGTGCT
TCAAGGGCTTATCTCCCCTATGAATGGTGTTGGACCAGATGATATTAATTTAAAAAGTTTGATTACCCGTCTTATGGATA
GCGAGGTTGACGAGGTCATCATCGCAACTAATGCAACGGCTGATGGTGAGGCAACCTCTATGTATATTTCACGGGTCCTC
AAACCTGCAGGTATTAAGGTGACCCGCCTAGCACGTGGGCTGGCTGTTGGTTCTGACATCGAGTACGCTGATGAAGTAAC
CTTGCTAAGAGCCATCGAGAATCGAACAGAACTATAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB P96053

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.869

100

0.869
  recR Bacillus subtilis subsp. subtilis str. 168

63.636

100

0.636
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475

Multiple sequence alignment