Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   STER_RS07035 Genome accession   NC_008532
Coordinates   1336999..1337685 (-) Length   228 a.a.
NCBI ID   WP_011681432.1    Uniprot ID   Q03JN0
Organism   Streptococcus thermophilus LMD-9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1331999..1342685
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STER_RS07005 (STER_1424) - 1332081..1332656 (+) 576 WP_002951444.1 CYTH domain-containing protein -
  STER_RS07010 (STER_1425) - 1333019..1333990 (+) 972 WP_011681428.1 ribose-phosphate diphosphokinase -
  STER_RS07015 (STER_1426) - 1333994..1335106 (+) 1113 WP_011681429.1 cysteine desulfurase family protein -
  STER_RS07020 (STER_1427) - 1335108..1335455 (+) 348 WP_002948028.1 DUF1831 domain-containing protein -
  STER_RS07025 (STER_1428) - 1335599..1336258 (+) 660 WP_011681430.1 redox-sensing transcriptional repressor Rex -
  STER_RS07030 (STER_1429) - 1336251..1336946 (+) 696 WP_011681431.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  STER_RS07035 (STER_1430) radC 1336999..1337685 (-) 687 WP_011681432.1 RadC family protein Machinery gene
  STER_RS07040 (STER_1431) - 1337864..1339204 (-) 1341 WP_223899627.1 DUF2142 domain-containing protein -
  STER_RS07045 (STER_1432) - 1339353..1341098 (-) 1746 WP_011681434.1 rhamnan synthesis F family protein -

Sequence

Protein


Download         Length: 228 a.a.        Molecular weight: 25818.92 Da        Isoelectric Point: 7.4016

>NTDB_id=25951 STER_RS07035 WP_011681432.1 1336999..1337685(-) (radC) [Streptococcus thermophilus LMD-9]
MYSIVAEESGLLPRERLLQKGAEVLSDQELLAIVLRTGTRSESVLSMANRILKGMTSLADLSRLSLNELQKIPGIGRVKS
IELKAMVELAKRIEKAELARSEQIMSSQQVARRMMLDIGDKPQEHLVAIYLDTQNRIIQQKTVFIGGVRRSIAEPREILH
YACHLMATSLIVVHNHPSGEAYPSRNDIDFTQKIKRSCDDLGICLLDHLIVGKSTYYSFREEREDFEL

Nucleotide


Download         Length: 687 bp        

>NTDB_id=25951 STER_RS07035 WP_011681432.1 1336999..1337685(-) (radC) [Streptococcus thermophilus LMD-9]
ATGTATAGTATTGTAGCTGAGGAGTCGGGGCTTTTGCCTCGTGAGCGTCTCTTACAAAAGGGTGCAGAGGTCTTGTCTGA
CCAGGAACTGTTGGCGATAGTGCTGCGAACGGGGACGAGGTCTGAGTCGGTCCTATCCATGGCCAACCGTATTTTAAAAG
GAATGACGAGTTTGGCGGATTTGTCTCGCTTGTCCTTGAATGAGCTTCAAAAAATTCCTGGTATTGGGCGTGTGAAATCC
ATTGAGCTGAAGGCTATGGTGGAGTTGGCTAAGAGGATTGAGAAGGCTGAGTTGGCTCGTTCCGAGCAGATAATGTCCAG
TCAGCAGGTGGCTCGTCGTATGATGTTAGATATTGGTGACAAGCCTCAGGAGCATCTGGTGGCCATCTACCTTGATACGC
AGAACCGTATTATTCAGCAAAAGACGGTCTTTATTGGTGGGGTTCGCCGTTCGATTGCCGAGCCGCGTGAGATTTTGCAT
TATGCTTGTCATCTGATGGCAACTTCCTTGATTGTGGTCCACAATCATCCTTCGGGGGAAGCCTATCCTAGTCGCAATGA
TATTGATTTTACTCAAAAGATTAAGAGGTCCTGTGACGACTTGGGAATTTGTCTTCTTGACCATCTTATTGTTGGAAAAT
CAACTTATTATTCCTTTCGTGAGGAGAGGGAGGATTTTGAACTTTAA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(13-80)

RadC-like JAB domain (RadC)

(105-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q03JN0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus pneumoniae TIGR4

59.375

98.246

0.583
  radC Streptococcus pneumoniae R6

58.929

98.246

0.579
  radC Streptococcus pneumoniae D39

58.929

98.246

0.579
  radC Streptococcus gordonii str. Challis substr. CH1

57.658

97.368

0.561
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

47.642

92.982

0.443

Multiple sequence alignment