Detailed information
Bioinformatically predicted
Overview
| Name | comB3 | Type | Machinery gene |
| Locus tag | HPAG1_RS00115 | Genome accession | NC_008086 |
| Coordinates | 15291..15554 (+) | Length | 87 a.a. |
| NCBI ID | WP_000584973.1 | Uniprot ID | G2MDJ4 |
| Organism | Helicobacter pylori HPAG1 | ||
| Function | transformation-associated type IV transport system (predicted from homology) DNA binding and uptake |
||
Genomic Context
Location: 10291..20554
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| HPAG1_RS00090 (HPAG1_0011) | groES | 10579..10935 (-) | 357 | WP_000671934.1 | co-chaperone GroES | - |
| HPAG1_RS00095 (HPAG1_0012) | dnaG | 11222..12901 (+) | 1680 | WP_000601589.1 | DNA primase | - |
| HPAG1_RS00100 (HPAG1_0013) | - | 12898..13950 (+) | 1053 | WP_000721204.1 | MnmA/TRMU family protein | - |
| HPAG1_RS00105 (HPAG1_0014) | - | 14039..14865 (+) | 827 | Protein_13 | DUF5718 family protein | - |
| HPAG1_RS00110 (HPAG1_0015) | comB2 | 15010..15291 (+) | 282 | WP_001279601.1 | TrbC/VirB2 family protein | Machinery gene |
| HPAG1_RS00115 (HPAG1_0016) | comB3 | 15291..15554 (+) | 264 | WP_000584973.1 | hypothetical protein | Machinery gene |
| HPAG1_RS00120 (HPAG1_0017) | comB4 | 15556..17919 (+) | 2364 | WP_000890493.1 | VirB4 family type IV secretion/conjugal transfer ATPase | Machinery gene |
| HPAG1_RS00125 (HPAG1_0018) | - | 18221..19561 (+) | 1341 | WP_041200025.1 | COG3014 family protein | - |
Sequence
Protein
Download Length: 87 a.a. Molecular weight: 10034.13 Da Isoelectric Point: 9.5290
>NTDB_id=25951 HPAG1_RS00115 WP_000584973.1 15291..15554(+) (comB3) [Helicobacter pylori HPAG1]
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA
MIILSASVKNLREISVKEKFLWLNAKSYLISVFVPFILLPWIDLLSAFLLYLGFLALFSVLEFFDEDIADIIVAKSKIKT
KTKCYRA
Nucleotide
Download Length: 264 bp
>NTDB_id=25951 HPAG1_RS00115 WP_000584973.1 15291..15554(+) (comB3) [Helicobacter pylori HPAG1]
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTGTGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGTGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACTAAATGTTATAGAGCGTAG
ATGATTATCCTGTCAGCGAGCGTGAAGAATTTGCGTGAAATTTCGGTTAAAGAAAAATTTTTGTGGCTGAACGCTAAGTC
TTATTTGATTTCTGTTTTTGTGCCTTTTATTTTGCTCCCTTGGATTGATTTGTTGAGCGCTTTTTTATTGTATTTAGGGT
TTTTAGCGCTCTTTAGCGTGCTGGAATTTTTTGATGAAGATATTGCAGATATTATTGTGGCTAAAAGCAAAATAAAGACT
AAAACTAAATGTTATAGAGCGTAG
Domains
No domain identified.
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| comB3 | Helicobacter pylori 26695 |
98.851 |
100 |
0.989 |