Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   HPAG1_RS00110 Genome accession   NC_008086
Coordinates   15010..15291 (+) Length   93 a.a.
NCBI ID   WP_001279601.1    Uniprot ID   A0AB74KP27
Organism   Helicobacter pylori HPAG1     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 10010..20291
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  HPAG1_RS00090 (HPAG1_0011) groES 10579..10935 (-) 357 WP_000671934.1 co-chaperone GroES -
  HPAG1_RS00095 (HPAG1_0012) dnaG 11222..12901 (+) 1680 WP_000601589.1 DNA primase -
  HPAG1_RS00100 (HPAG1_0013) - 12898..13950 (+) 1053 WP_000721204.1 MnmA/TRMU family protein -
  HPAG1_RS00105 (HPAG1_0014) - 14039..14865 (+) 827 Protein_13 DUF5718 family protein -
  HPAG1_RS00110 (HPAG1_0015) comB2 15010..15291 (+) 282 WP_001279601.1 TrbC/VirB2 family protein Machinery gene
  HPAG1_RS00115 (HPAG1_0016) comB3 15291..15554 (+) 264 WP_000584973.1 hypothetical protein Machinery gene
  HPAG1_RS00120 (HPAG1_0017) comB4 15556..17919 (+) 2364 WP_000890493.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  HPAG1_RS00125 (HPAG1_0018) - 18221..19561 (+) 1341 WP_041200025.1 COG3014 family protein -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10583.82 Da        Isoelectric Point: 8.0163

>NTDB_id=25950 HPAG1_RS00110 WP_001279601.1 15010..15291(+) (comB2) [Helicobacter pylori HPAG1]
MSDHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=25950 HPAG1_RS00110 WP_001279601.1 15010..15291(+) (comB2) [Helicobacter pylori HPAG1]
ATGTCCGATCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGTTTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGGATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTTATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(8-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

97.849

100

0.978

Multiple sequence alignment