Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   STER_RS04995 Genome accession   NC_008532
Coordinates   935410..936480 (-) Length   356 a.a.
NCBI ID   WP_011681135.1    Uniprot ID   Q03KP9
Organism   Streptococcus thermophilus LMD-9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 930410..941480
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STER_RS04980 (STER_1010) pstB 931135..931893 (+) 759 WP_011681133.1 phosphate ABC transporter ATP-binding protein PstB -
  STER_RS04985 (STER_1011) phoU 931921..932574 (+) 654 WP_002950747.1 phosphate signaling complex protein PhoU -
  STER_RS04990 (STER_1012) - 932708..935248 (+) 2541 WP_011225973.1 M1 family metallopeptidase -
  STER_RS04995 (STER_1013) xerS 935410..936480 (-) 1071 WP_011681135.1 tyrosine recombinase XerS Machinery gene
  STER_RS05000 (STER_1014) - 936705..937694 (-) 990 WP_011681136.1 lipoate--protein ligase -
  STER_RS11820 (STER_1015) - 938133..938336 (+) 204 WP_011681137.1 hypothetical protein -
  STER_RS05015 (STER_1016) glgP 938644..940908 (-) 2265 WP_011681138.1 glycogen/starch/alpha-glucan family phosphorylase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41505.64 Da        Isoelectric Point: 9.6822

>NTDB_id=25936 STER_RS04995 WP_011681135.1 935410..936480(-) (xerS) [Streptococcus thermophilus LMD-9]
MKRELLLEKIEEYKSLMPWFVLEYYQSKLSVPYSFTTLYEYLKEYKRFFNWLIDSGISDADDIASIHIKTLENLTKKDME
SFVLYLRERPSLNTYSKKQGVSQTTINRTLSALSSLYKYLTEEVEGPDGEPYFYRNVMKKISTKKKKETLAARAENIKQK
LFLGDETMKFLDYVENEYEVKLSNRAKSSFYKNKERDLAIIALLLSSGVRLSEAVNLDLKDINLKMMVIDVTRKGGQRDS
VNMASFARPYLENYLSIRNKRYKAEKQDVALFLTEYRGVPNRIDASSIEKMVGKYSQDFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHASTQVTDLYTHIVNDEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=25936 STER_RS04995 WP_011681135.1 935410..936480(-) (xerS) [Streptococcus thermophilus LMD-9]
ATGAAACGTGAACTCTTACTAGAAAAAATTGAAGAATATAAATCTCTTATGCCTTGGTTTGTTTTGGAGTATTATCAATC
TAAACTATCGGTACCGTATTCTTTCACGACCTTATATGAATATCTCAAGGAATATAAACGCTTTTTTAACTGGTTAATTG
ACTCAGGTATTTCAGATGCTGATGATATTGCCTCAATTCATATCAAAACCTTGGAGAATCTAACTAAAAAAGATATGGAA
TCGTTTGTCCTCTATCTACGTGAACGTCCATCTTTAAATACCTATTCAAAGAAACAGGGTGTCTCTCAAACAACCATTAA
TCGTACGCTTTCAGCTCTATCTAGTCTCTATAAGTATTTAACTGAGGAGGTCGAGGGACCTGATGGTGAACCATATTTCT
ATCGTAACGTCATGAAAAAAATTTCGACTAAGAAAAAGAAAGAGACCTTGGCTGCACGTGCTGAGAATATCAAACAAAAA
CTTTTTCTAGGCGATGAAACCATGAAGTTCCTTGATTATGTAGAAAATGAATACGAAGTCAAACTCTCAAATCGTGCGAA
ATCTTCGTTTTATAAGAATAAAGAGCGAGATTTAGCCATCATTGCCCTGCTGCTGTCTTCAGGCGTTCGACTCTCTGAGG
CTGTAAATCTGGACCTTAAAGATATCAATTTAAAAATGATGGTTATTGACGTTACTCGAAAAGGTGGTCAACGGGACTCG
GTGAATATGGCAAGTTTTGCAAGACCCTATCTTGAAAACTATCTTAGCATACGTAATAAACGCTATAAGGCTGAAAAGCA
AGATGTTGCTCTATTTTTAACAGAATATCGAGGCGTTCCCAACCGTATTGATGCTTCAAGTATCGAAAAAATGGTTGGGA
AGTATTCTCAGGATTTCAAGATTCGTGTCACTCCCCACAAACTACGTCATACTTTGGCAACACGTCTTTATGATGCTACT
AAGTCTCAAGTTTTAGTTAGTCATCAACTTGGTCATGCTTCCACTCAGGTCACTGATCTTTACACCCATATTGTAAATGA
TGAGCAAAAAAATGCTCTAGATAATTTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(182-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q03KP9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

82.303

100

0.823

Multiple sequence alignment