Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   LDB_RS00040 Genome accession   NC_008054
Coordinates   9574..10149 (+) Length   191 a.a.
NCBI ID   WP_011543464.1    Uniprot ID   A0AAV5PJF2
Organism   Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 4574..15149
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  LDB_RS00025 (Ldb0005) gyrB 4579..6540 (+) 1962 WP_011543462.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  LDB_RS00030 (Ldb0006) gyrA 6553..9024 (+) 2472 WP_011543463.1 DNA gyrase subunit A -
  LDB_RS00035 (Ldb0007) rpsF 9240..9533 (+) 294 WP_003612647.1 30S ribosomal protein S6 -
  LDB_RS00040 (Ldb0008) ssb 9574..10149 (+) 576 WP_011543464.1 single-stranded DNA-binding protein Machinery gene
  LDB_RS00045 (Ldb0009) rpsR 10176..10412 (+) 237 WP_011543465.1 30S ribosomal protein S18 -
  LDB_RS00050 (Ldb0010) - 10553..12574 (+) 2022 WP_011543466.1 DHH family phosphoesterase -
  LDB_RS00055 (Ldb0011) rplI 12597..13052 (+) 456 WP_011543467.1 50S ribosomal protein L9 -
  LDB_RS00060 (Ldb0012) dnaB 13076..14446 (+) 1371 WP_011543468.1 replicative DNA helicase -

Sequence

Protein


Download         Length: 191 a.a.        Molecular weight: 20582.25 Da        Isoelectric Point: 4.6437

>NTDB_id=25936 LDB_RS00040 WP_011543464.1 9574..10149(+) (ssb) [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002]
MINNVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNASGQREADFISCVIWRKAAENFCNFTSKGSLVGIQGRIQTR
NYDNKDGQRVYVTEVLVDNFSLLESRRERESRQQNSGFGGQGQSQNTGFNTGFGGGSGYANNAFGSPAQSNGPANAGFNE
DNKKDAGGDTNTNPFDSSDDAINVSNDDLPF

Nucleotide


Download         Length: 576 bp        

>NTDB_id=25936 LDB_RS00040 WP_011543464.1 9574..10149(+) (ssb) [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842 = JCM 1002]
ATGATCAATAACGTTGTACTTGTTGGCCGTTTAACACGTGATCCTGAATTACGTACTACTGGGAGCGGCATCTCGGTTGC
TACGTTCACTTTGGCCGTTGACCGGCAGTTTACCAATGCATCAGGCCAGAGAGAAGCGGACTTCATCAGCTGCGTGATTT
GGCGCAAGGCTGCGGAGAACTTCTGCAACTTCACCAGCAAGGGCAGTTTGGTGGGCATCCAGGGCCGGATCCAGACCAGA
AACTATGATAACAAGGACGGCCAGCGAGTTTACGTGACAGAAGTCCTCGTGGACAACTTCTCACTGCTCGAATCACGCCG
CGAGCGTGAAAGCCGTCAGCAAAACAGCGGATTTGGCGGCCAAGGTCAAAGCCAAAACACCGGCTTCAACACCGGATTTG
GCGGCGGCAGCGGCTACGCCAACAACGCCTTCGGCAGCCCGGCCCAGTCAAACGGGCCAGCTAATGCCGGATTCAATGAA
GATAACAAGAAAGATGCCGGCGGAGACACGAACACCAACCCGTTCGACAGCTCTGACGATGCAATCAACGTCTCAAATGA
CGATCTTCCATTTTAA

Domains

Predicted by InterproScan.

Single-strand binding protein family (SSB)

(2-102)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Latilactobacillus sakei subsp. sakei 23K

58.333

100

0.586
  ssbA Bacillus subtilis subsp. subtilis str. 168

46.597

100

0.466

Multiple sequence alignment