Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Machinery gene
Locus tag   DOP62_RS10150 Genome accession   NZ_CP030139
Coordinates   2038408..2039847 (-) Length   479 a.a.
NCBI ID   WP_208675094.1    Uniprot ID   -
Organism   Synechococcus elongatus PCC 11801     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2033408..2044847
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOP62_RS10125 (DOP62_01870) mreD 2034789..2035472 (-) 684 WP_261789949.1 rod shape-determining protein MreD -
  DOP62_RS10130 (DOP62_01865) mreC 2035433..2036182 (-) 750 WP_208675101.1 rod shape-determining protein MreC -
  DOP62_RS10135 (DOP62_01860) - 2036207..2037208 (-) 1002 WP_275937699.1 rod shape-determining protein -
  DOP62_RS10140 (DOP62_01855) ssb 2037437..2037799 (+) 363 WP_208675098.1 single-stranded DNA-binding protein Machinery gene
  DOP62_RS10145 (DOP62_01850) - 2037937..2038368 (+) 432 WP_208675096.1 GNAT family N-acetyltransferase -
  DOP62_RS10150 (DOP62_01845) comA 2038408..2039847 (-) 1440 WP_208675094.1 phospholipase D-like domain-containing protein Machinery gene
  DOP62_RS10155 (DOP62_01840) - 2040009..2041097 (+) 1089 WP_208675093.1 TrkA family potassium uptake protein -
  DOP62_RS10160 (DOP62_01835) - 2041223..2041870 (+) 648 WP_208675092.1 Coq4 family protein -
  DOP62_RS10165 (DOP62_01830) - 2041917..2042954 (-) 1038 WP_208675091.1 hypothetical protein -
  DOP62_RS10170 (DOP62_01825) - 2042984..2044201 (-) 1218 WP_208675090.1 cation:proton antiporter -

Sequence

Protein


Download         Length: 479 a.a.        Molecular weight: 52835.28 Da        Isoelectric Point: 5.3434

>NTDB_id=259303 DOP62_RS10150 WP_208675094.1 2038408..2039847(-) (comA) [Synechococcus elongatus PCC 11801]
MKPGVIAFLLGLLTACQAPLAQILPVAGGGSTRWDANAPLQVAFNHDPDQRFTDGLGRDREGDDLEGRLLASLEQATTSI
DVAVQEIQLPRLATVLAQKHQAGIPVRVILENQYRQPWSQRLSAPMSDRDRQRLENYRQLADRNRDGQLSPAEIATGDAV
VILERAGVPILDDTADGSKGSGLMHHKFAIIDRQWVVTGSANWTASDFFGDPGRLASRGNANHLLWFRSPAIAATFQTEF
DLMWGDGPGNLPDSLFGRAKPPRSPQSVRVGQTRVLVQFSPSSLRLPWEQSTNGTIARYLTQAQQQVDLALFVFSEQAIA
DVLEARSQQGTQIRLLIDPGFAYRPYSELLDAFGLTLPDRDCRVEPNNRPWATPLGTAGVPRLAPGDTLHHKFAVIDRQR
VLTGSHNWSAAANENNDETFLVIEDATLADRFSAEFERLYASAFLEIPPALQRRVNEANRRCGSRLEIAPSRDSAEPED

Nucleotide


Download         Length: 1440 bp        

>NTDB_id=259303 DOP62_RS10150 WP_208675094.1 2038408..2039847(-) (comA) [Synechococcus elongatus PCC 11801]
ATGAAGCCTGGAGTGATCGCTTTTCTACTGGGACTGCTCACCGCCTGCCAAGCGCCGCTCGCGCAGATTCTCCCCGTTGC
TGGCGGTGGCTCCACTCGTTGGGATGCCAATGCGCCTCTACAGGTTGCTTTTAATCACGATCCAGACCAGCGATTTACCG
ACGGCTTAGGGCGCGATCGCGAGGGAGATGACCTGGAAGGGCGACTCCTTGCCAGCTTGGAACAAGCAACAACTTCAATC
GATGTTGCGGTTCAGGAAATCCAGCTTCCTCGACTGGCAACGGTCTTGGCCCAAAAACACCAGGCGGGCATCCCGGTTCG
CGTCATTTTGGAAAACCAATATCGCCAGCCCTGGAGTCAGCGCCTCTCTGCCCCGATGAGCGATCGCGATCGGCAACGAC
TGGAGAACTACCGGCAACTGGCCGATCGCAATCGAGATGGCCAGCTCAGTCCAGCTGAAATTGCCACGGGAGATGCTGTC
GTCATCCTTGAGCGTGCTGGGGTGCCGATCCTAGATGACACCGCTGATGGCAGCAAAGGTAGCGGCCTCATGCACCACAA
GTTTGCGATCATCGATCGCCAATGGGTCGTCACCGGTTCAGCCAACTGGACAGCCAGTGATTTCTTTGGCGATCCGGGTC
GACTGGCCAGCCGAGGCAATGCTAATCATCTGCTCTGGTTCCGCAGCCCTGCGATCGCCGCTACCTTCCAAACAGAATTT
GACCTTATGTGGGGAGATGGCCCCGGTAACTTGCCCGACAGTCTGTTTGGCCGGGCGAAGCCGCCGCGATCGCCGCAATC
AGTGCGCGTAGGTCAGACCCGTGTCCTGGTGCAGTTTTCGCCCTCCAGCCTGCGATTGCCTTGGGAGCAGAGCACCAATG
GCACGATCGCTCGTTACCTCACGCAAGCTCAACAGCAGGTTGATCTGGCGCTCTTTGTTTTTTCCGAGCAGGCGATCGCG
GATGTTTTGGAAGCGCGATCGCAGCAAGGCACCCAGATTCGCTTGCTGATTGACCCTGGCTTTGCCTATCGGCCCTACAG
CGAACTGCTGGATGCGTTCGGCCTAACGCTACCCGATCGCGACTGTCGTGTTGAGCCTAACAATCGCCCTTGGGCAACAC
CACTGGGAACTGCCGGAGTGCCGCGTTTGGCGCCGGGCGATACGCTGCATCACAAGTTCGCCGTGATCGATCGCCAGCGT
GTGCTGACCGGATCCCACAACTGGAGTGCAGCGGCAAACGAAAACAACGATGAAACCTTTCTGGTCATTGAGGATGCAAC
CCTAGCGGATCGATTCAGTGCCGAATTTGAGCGACTCTATGCCAGTGCGTTCTTGGAAATTCCGCCAGCTCTACAACGGC
GAGTCAACGAGGCCAATCGCCGCTGTGGGAGTCGATTGGAAATCGCACCCAGCCGAGATTCCGCAGAGCCTGAAGACTAA

Domains

Predicted by InterProScan.

PLD-like domain (PLDc_2)

(298-439)

PLD-like domain (PLDc_2)

(70-244)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Synechocystis sp. PCC 6803

45.588

99.374

0.453