Detailed information    

insolico Bioinformatically predicted

Overview

Name   ssb   Type   Machinery gene
Locus tag   DOP62_RS10140 Genome accession   NZ_CP030139
Coordinates   2037437..2037799 (+) Length   120 a.a.
NCBI ID   WP_208675098.1    Uniprot ID   -
Organism   Synechococcus elongatus PCC 11801     
Function   ssDNA binding (predicted from homology)   
DNA processing

Genomic Context

Location: 2032437..2042799
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOP62_RS10115 (DOP62_01880) - 2032456..2033208 (-) 753 WP_208675105.1 cbb3-type cytochrome c oxidase subunit II -
  DOP62_RS10120 (DOP62_01875) - 2033205..2034656 (-) 1452 WP_208675103.1 cbb3-type cytochrome c oxidase subunit I -
  DOP62_RS10125 (DOP62_01870) mreD 2034789..2035472 (-) 684 WP_261789949.1 rod shape-determining protein MreD -
  DOP62_RS10130 (DOP62_01865) mreC 2035433..2036182 (-) 750 WP_208675101.1 rod shape-determining protein MreC -
  DOP62_RS10135 (DOP62_01860) - 2036207..2037208 (-) 1002 WP_275937699.1 rod shape-determining protein -
  DOP62_RS10140 (DOP62_01855) ssb 2037437..2037799 (+) 363 WP_208675098.1 single-stranded DNA-binding protein Machinery gene
  DOP62_RS10145 (DOP62_01850) - 2037937..2038368 (+) 432 WP_208675096.1 GNAT family N-acetyltransferase -
  DOP62_RS10150 (DOP62_01845) comA 2038408..2039847 (-) 1440 WP_208675094.1 phospholipase D-like domain-containing protein Machinery gene
  DOP62_RS10155 (DOP62_01840) - 2040009..2041097 (+) 1089 WP_208675093.1 TrkA family potassium uptake protein -
  DOP62_RS10160 (DOP62_01835) - 2041223..2041870 (+) 648 WP_208675092.1 Coq4 family protein -

Sequence

Protein


Download         Length: 120 a.a.        Molecular weight: 13530.20 Da        Isoelectric Point: 7.9752

>NTDB_id=259302 DOP62_RS10140 WP_208675098.1 2037437..2037799(+) (ssb) [Synechococcus elongatus PCC 11801]
MSLNVVNLVGRVGRDPEARYFESGSVVCKFSLAVNRRTRNDEPDWFNVEFWGREAQVAIDYVKKGSLIGISGALKIESWT
DRDGKQRTTPVVRGNRLELLGSRRDQEGGMAPRDPDSDLF

Nucleotide


Download         Length: 363 bp        

>NTDB_id=259302 DOP62_RS10140 WP_208675098.1 2037437..2037799(+) (ssb) [Synechococcus elongatus PCC 11801]
ATGAGCTTAAATGTTGTCAACTTGGTGGGGCGCGTGGGCCGCGACCCTGAGGCTCGCTACTTCGAGTCCGGCTCAGTAGT
CTGTAAGTTTTCGCTGGCGGTCAATCGCCGCACCCGGAACGATGAACCCGACTGGTTCAACGTGGAGTTTTGGGGGCGTG
AGGCACAAGTTGCGATCGACTATGTCAAAAAAGGCAGCCTGATCGGGATCAGTGGCGCCCTCAAAATCGAAAGCTGGACC
GATCGCGATGGCAAGCAGCGAACCACTCCTGTGGTGAGGGGCAATCGTCTCGAACTGCTCGGCTCGCGCCGCGATCAGGA
AGGTGGGATGGCACCTCGAGATCCCGATAGCGATTTGTTCTAG

Domains

Predicted by InterProScan.

Single-strand binding protein family (SSB)

(4-99)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ssb Neisseria gonorrhoeae MS11

37.5

100

0.375