Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   STER_RS03270 Genome accession   NC_008532
Coordinates   602911..603507 (+) Length   198 a.a.
NCBI ID   WP_011680928.1    Uniprot ID   Q03LJ7
Organism   Streptococcus thermophilus LMD-9     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 597911..608507
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  STER_RS03245 (STER_0658) - 598048..598260 (+) 213 WP_011680924.1 alpha/beta fold hydrolase -
  STER_RS03250 (STER_0659) - 598507..598698 (+) 192 WP_011227003.1 alpha/beta fold hydrolase -
  STER_RS03255 (STER_0660) - 598871..599725 (+) 855 WP_011680925.1 bifunctional methylenetetrahydrofolate dehydrogenase/methenyltetrahydrofolate cyclohydrolase -
  STER_RS03260 (STER_0661) - 599729..600565 (+) 837 WP_011680926.1 NAD(P)H-hydrate dehydratase -
  STER_RS03265 (STER_0662) pbp2b 600687..602801 (+) 2115 WP_011680927.1 penicillin-binding protein PBP2B -
  STER_RS03270 (STER_0663) recR 602911..603507 (+) 597 WP_011680928.1 recombination mediator RecR Machinery gene
  STER_RS11685 (STER_0665) licT 603609..604449 (+) 841 Protein_574 BglG family transcription antiterminator LicT -
  STER_RS03285 (STER_0666) ybeY 604669..605166 (+) 498 WP_002950224.1 rRNA maturation RNase YbeY -
  STER_RS03290 (STER_0667) - 605147..605551 (+) 405 WP_002946201.1 diacylglycerol kinase family protein -
  STER_RS03295 (STER_0668) era 605570..606469 (+) 900 WP_011680930.1 GTPase Era -
  STER_RS03300 (STER_0669) mutM 606516..607337 (+) 822 WP_011225698.1 DNA-formamidopyrimidine glycosylase -
  STER_RS03305 (STER_0670) coaE 607334..607927 (+) 594 WP_014621355.1 dephospho-CoA kinase -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21737.95 Da        Isoelectric Point: 4.5326

>NTDB_id=25929 STER_RS03270 WP_011680928.1 602911..603507(+) (recR) [Streptococcus thermophilus LMD-9]
MLYPTPIAKLIDSFSKLPGIGAKTATRLAFYTISMSDEDVNDFAKNLLAAKRELTYCSVCGRLTDDDPCIICTDETRDRT
KILVVEDSKDVSAMEKIQEYRGLYHVLQGLISPMNGVGPDDINLKSLIARLMDSEVDEVIIATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=25929 STER_RS03270 WP_011680928.1 602911..603507(+) (recR) [Streptococcus thermophilus LMD-9]
ATGCTTTATCCTACTCCAATTGCTAAACTGATTGATAGTTTTTCAAAACTTCCAGGAATTGGGGCTAAGACGGCGACACG
TCTGGCTTTCTATACCATTAGCATGTCTGATGAAGATGTCAATGATTTTGCAAAAAATCTTTTAGCAGCAAAACGTGAGT
TGACCTATTGTTCAGTTTGTGGTCGCTTGACTGATGATGACCCATGTATTATTTGTACGGATGAAACTAGAGACCGTACT
AAGATTTTGGTTGTTGAGGACTCCAAAGATGTTTCTGCTATGGAAAAGATTCAGGAATATCGTGGTCTCTACCATGTGCT
TCAAGGGCTTATCTCCCCTATGAATGGTGTTGGACCAGATGATATTAATTTAAAAAGTTTGATTGCCCGTCTTATGGATA
GTGAGGTTGACGAGGTTATCATCGCAACTAATGCAACGGCCGATGGTGAGGCAACCTCTATGTATATTTCACGGGTCCTT
AAACCTGCAGGTATTAAGGTGACCCGCCTAGCGCGTGGGCTGGCTGTTGGTTCTGACATCGAGTACGCTGATGAAGTAAC
CTTGCTAAGAGCCATCGAGAATCGAACAGAACTGTAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(39-78)

Toprim domain (Toprim_4)

(81-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q03LJ7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

86.364

100

0.864
  recR Bacillus subtilis subsp. subtilis str. 168

63.636

100

0.636
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.205

98.485

0.475

Multiple sequence alignment