Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilH   Type   Machinery gene
Locus tag   DOP62_RS01535 Genome accession   NZ_CP030139
Coordinates   322176..322547 (+) Length   123 a.a.
NCBI ID   WP_208673140.1    Uniprot ID   -
Organism   Synechococcus elongatus PCC 11801     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 317176..327547
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOP62_RS01520 (DOP62_09090) - 317376..319178 (-) 1803 WP_208673146.1 ABC transporter ATP-binding protein -
  DOP62_RS01525 (DOP62_09085) aspS 319359..321158 (+) 1800 WP_208673144.1 aspartate--tRNA ligase -
  DOP62_RS01530 (DOP62_09080) truB 321202..322086 (-) 885 WP_208673142.1 tRNA pseudouridine(55) synthase TruB -
  DOP62_RS01535 (DOP62_09075) pilH 322176..322547 (+) 372 WP_208673140.1 PleD family two-component system response regulator Machinery gene
  DOP62_RS01540 (DOP62_09070) rpmA 322675..322941 (-) 267 WP_208673138.1 50S ribosomal protein L27 -
  DOP62_RS01545 (DOP62_09065) rplU 322976..323359 (-) 384 WP_208673136.1 50S ribosomal protein L21 -
  DOP62_RS01550 (DOP62_09060) - 323596..324450 (+) 855 WP_208673134.1 circadian clock protein KaiA -
  DOP62_RS01555 (DOP62_09055) kaiB 324540..324848 (+) 309 WP_208673132.1 circadian clock protein KaiB -
  DOP62_RS01560 (DOP62_09050) kaiC 324900..326459 (+) 1560 WP_208673131.1 circadian clock protein KaiC -
  DOP62_RS01565 (DOP62_09045) - 326456..327463 (-) 1008 WP_261789795.1 acyl-CoA dehydrogenase family protein -

Sequence

Protein


Download         Length: 123 a.a.        Molecular weight: 13511.44 Da        Isoelectric Point: 4.4829

>NTDB_id=259268 DOP62_RS01535 WP_208673140.1 322176..322547(+) (pilH) [Synechococcus elongatus PCC 11801]
MANILVVDDSSLYLELARQALAEHGHHVTLANNGQEALQTIAQQKPDLILLDIVMPEMNGYDVLRSLKKSPDTASIPVIL
CSTKGEDFDKYWGLKQGATAYLTKPYEVNDLLVLVQEQISSAG

Nucleotide


Download         Length: 372 bp        

>NTDB_id=259268 DOP62_RS01535 WP_208673140.1 322176..322547(+) (pilH) [Synechococcus elongatus PCC 11801]
ATGGCCAATATCCTCGTTGTTGACGACAGCAGTCTCTATTTAGAACTGGCGCGTCAAGCGCTAGCTGAACATGGCCATCA
CGTGACTCTTGCCAACAATGGTCAGGAAGCTTTACAAACCATTGCCCAGCAAAAGCCAGACCTGATCTTGCTCGACATTG
TGATGCCGGAAATGAATGGCTACGATGTCTTGCGATCACTCAAGAAATCGCCGGACACAGCTAGCATTCCCGTCATCCTT
TGTTCCACGAAGGGCGAAGACTTTGATAAGTATTGGGGCCTAAAGCAGGGCGCGACTGCTTACTTAACCAAGCCCTATGA
GGTCAACGATCTGCTGGTTTTGGTGCAGGAACAAATTAGCTCTGCAGGTTAG

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-114)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilH Synechocystis sp. PCC 6803

47.009

95.122

0.447
  vicR Streptococcus mutans UA159

36.719

100

0.382