Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DOP62_RS00595 Genome accession   NZ_CP030139
Coordinates   115023..115622 (-) Length   199 a.a.
NCBI ID   WP_370538826.1    Uniprot ID   -
Organism   Synechococcus elongatus PCC 11801     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 110023..120622
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOP62_RS00565 (DOP62_11005) - 110161..111363 (-) 1203 WP_208673695.1 Coenzyme F420 hydrogenase/dehydrogenase, beta subunit C-terminal domain -
  DOP62_RS00570 (DOP62_11010) - 111623..112906 (+) 1284 WP_338441760.1 LCP family protein -
  DOP62_RS00575 (DOP62_11015) - 112938..113441 (+) 504 WP_208673697.1 pentapeptide repeat-containing protein -
  DOP62_RS00580 (DOP62_11020) - 113530..114015 (+) 486 WP_208673698.1 hypothetical protein -
  DOP62_RS00585 (DOP62_11025) - 114086..114325 (-) 240 WP_208673700.1 hypothetical protein -
  DOP62_RS00590 (DOP62_11030) - 114583..114807 (-) 225 WP_208673704.1 hypothetical protein -
  DOP62_RS00595 (DOP62_11035) recR 115023..115622 (-) 600 WP_370538826.1 recombination mediator RecR Machinery gene
  DOP62_RS00600 (DOP62_11040) - 115783..116283 (+) 501 WP_208673706.1 hypothetical protein -
  DOP62_RS00605 (DOP62_11045) sipA 116394..116627 (+) 234 WP_208673708.1 regulatory protein SipA -
  DOP62_RS00610 (DOP62_11050) - 116687..117115 (-) 429 WP_208673710.1 hypothetical protein -
  DOP62_RS00615 (DOP62_11055) cobU 117169..117747 (-) 579 WP_338441762.1 bifunctional adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase -
  DOP62_RS00620 (DOP62_11060) - 117757..119022 (-) 1266 WP_208673721.1 proton extrusion protein PcxA -

Sequence

Protein


Download         Length: 199 a.a.        Molecular weight: 22025.53 Da        Isoelectric Point: 7.3011

>NTDB_id=259266 DOP62_RS00595 WP_370538826.1 115023..115622(-) (recR) [Synechococcus elongatus PCC 11801]
MSVYTRPLARLIEHLQKLPGIGPKSAQRLALHLIQRPETEIAAFAEALLAAKQQVGHCQRCFHLSSEDLCNICRDPKRDT
QTICVVADPRDVIALEKTREYKGLYHVLGGLISPMDGIGPEQLTVQALVRRVAQEKTQEVIIAISPSVEGETTTLYVGQL
LKPFTRVTRIAFGLPMGGDLEYADEVTLARALEGRRDLT

Nucleotide


Download         Length: 600 bp        

>NTDB_id=259266 DOP62_RS00595 WP_370538826.1 115023..115622(-) (recR) [Synechococcus elongatus PCC 11801]
GTGTCTGTTTACACCCGCCCGCTGGCCCGTCTGATTGAGCATCTCCAAAAACTGCCCGGGATTGGCCCCAAATCAGCTCA
ACGTTTAGCCCTGCACTTGATCCAACGGCCAGAAACAGAAATTGCCGCATTTGCCGAAGCCCTACTGGCAGCGAAGCAAC
AAGTGGGCCATTGTCAGCGCTGTTTCCATCTCTCCTCAGAAGATCTGTGCAACATCTGTCGGGATCCCAAACGCGACACG
CAAACCATCTGCGTGGTCGCCGATCCCCGCGATGTGATCGCTCTTGAAAAGACACGGGAATATAAGGGGCTCTATCACGT
TCTCGGTGGTCTGATCTCGCCGATGGATGGTATCGGGCCCGAACAGCTGACCGTTCAAGCCCTCGTACGTCGAGTCGCTC
AAGAAAAAACACAAGAGGTGATTATTGCTATCAGCCCCAGTGTGGAGGGCGAAACCACAACGCTGTACGTCGGGCAACTC
CTAAAGCCGTTTACTCGCGTCACACGCATTGCCTTTGGCTTGCCAATGGGAGGCGATTTGGAATATGCCGACGAGGTCAC
TCTAGCCCGTGCACTGGAAGGGCGCCGCGATCTGACTTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(82-171)

RecR protein (RecR_ZnF)

(41-79)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

53.061

98.492

0.523
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

51.777

98.995

0.513
  recR Streptococcus pneumoniae R6

48.223

98.995

0.477

Multiple sequence alignment