Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   CHN55_RS12100 Genome accession   NZ_CP030136
Coordinates   2295145..2295741 (-) Length   198 a.a.
NCBI ID   WP_000559162.1    Uniprot ID   -
Organism   Staphylococcus aureus strain S57     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2290145..2300741
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CHN55_RS12095 (CHN55_12095) - 2294835..2294940 (-) 106 Protein_2235 hypothetical protein -
  CHN55_RS12100 (CHN55_12100) recR 2295145..2295741 (-) 597 WP_000559162.1 recombination mediator RecR Machinery gene
  CHN55_RS12105 (CHN55_12105) - 2295748..2296065 (-) 318 WP_001213992.1 YbaB/EbfC family nucleoid-associated protein -
  CHN55_RS12110 (CHN55_12110) dnaX 2296155..2297852 (-) 1698 WP_001109047.1 DNA polymerase III subunit gamma/tau -
  CHN55_RS12115 (CHN55_12115) - 2297921..2298445 (-) 525 Protein_2239 N-acetyltransferase -
  CHN55_RS12120 (CHN55_12120) - 2298583..2298684 (-) 102 WP_031775041.1 hypothetical protein -
  CHN55_RS12130 (CHN55_12130) treR 2299088..2299816 (-) 729 WP_001118675.1 trehalose operon repressor -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22113.54 Da        Isoelectric Point: 4.7623

>NTDB_id=259080 CHN55_RS12100 WP_000559162.1 2295145..2295741(-) (recR) [Staphylococcus aureus strain S57]
MHYPEPISKLIDSFMKLPGIGPKTAQRLAFHTLDMKEDDVVQFAKALVDVKRELTYCSVCGHITENEPCYICEDKQRDRS
VICVVEDDKDVIAMEKMREYKGLYHVLHGSISPMDGIGPEDINIPSLIERLKNDEVSELILAMNPNLEGESTAMYISRLV
KPIGIKVTRLAQGLSVGGDLEYADEVTLSKAIAGRTEM

Nucleotide


Download         Length: 597 bp        

>NTDB_id=259080 CHN55_RS12100 WP_000559162.1 2295145..2295741(-) (recR) [Staphylococcus aureus strain S57]
ATGCATTATCCAGAACCTATATCAAAACTTATTGATAGCTTTATGAAATTGCCAGGCATTGGTCCAAAGACAGCCCAACG
TCTGGCTTTTCATACCTTAGATATGAAAGAAGACGATGTTGTTCAGTTTGCCAAAGCATTAGTAGATGTTAAGAGAGAAT
TAACATATTGTAGCGTATGTGGTCACATTACTGAAAATGAGCCATGTTATATTTGTGAAGATAAACAAAGAGATCGTTCA
GTTATTTGTGTTGTGGAAGATGACAAAGATGTCATAGCTATGGAAAAAATGAGAGAATACAAAGGTTTATATCACGTTTT
ACATGGGTCTATTTCGCCTATGGATGGAATTGGACCAGAAGATATTAATATTCCTTCATTGATTGAACGCTTGAAAAACG
ATGAAGTTAGCGAATTAATCTTAGCTATGAACCCGAACTTAGAGGGGGAATCTACAGCCATGTATATTTCTAGATTAGTT
AAGCCTATAGGTATCAAAGTGACGAGATTAGCACAAGGGTTATCGGTAGGTGGCGATTTAGAGTATGCTGACGAAGTAAC
ATTATCTAAAGCAATCGCAGGTAGAACAGAAATGTAA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

76.768

100

0.768
  recR Streptococcus pneumoniae R6

63.636

100

0.636
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.718

98.485

0.48