Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   DP112_RS10935 Genome accession   NZ_CP030125
Coordinates   2206367..2207461 (+) Length   364 a.a.
NCBI ID   WP_114866987.1    Uniprot ID   -
Organism   Streptococcus suis strain HA1003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2201367..2212461
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP112_RS10910 (DP112_10915) pgsA 2201879..2202418 (-) 540 WP_014638849.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DP112_RS10915 (DP112_10920) rodZ 2202438..2203292 (-) 855 WP_024384291.1 cytoskeleton protein RodZ -
  DP112_RS10920 (DP112_10925) - 2203374..2204657 (-) 1284 WP_114866985.1 pitrilysin family protein -
  DP112_RS10925 (DP112_10930) - 2204654..2205907 (-) 1254 WP_014638852.1 pitrilysin family protein -
  DP112_RS10930 (DP112_10935) yaaA 2205981..2206364 (+) 384 WP_114866986.1 S4 domain-containing protein YaaA -
  DP112_RS10935 (DP112_10940) recF 2206367..2207461 (+) 1095 WP_114866987.1 DNA replication/repair protein RecF Machinery gene
  DP112_RS10940 (DP112_10945) guaB 2207532..2209013 (-) 1482 WP_024379541.1 IMP dehydrogenase -
  DP112_RS10945 (DP112_10950) trpS 2209245..2210270 (-) 1026 WP_114866988.1 tryptophan--tRNA ligase -
  DP112_RS10950 (DP112_10955) - 2210625..2211497 (+) 873 WP_114866989.1 YitT family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 42018.09 Da        Isoelectric Point: 7.2233

>NTDB_id=258993 DP112_RS10935 WP_114866987.1 2206367..2207461(+) (recF) [Streptococcus suis strain HA1003]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYALALTRSHRTRTDKDLLQFQEKGLSISGLLHRASGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRLDFLKKLEEFGNRKVQEISGSREELTIEYQTSIKLTDDVNLIDKFLT
ELEKCRKRDLFKKNTGVGPHRDDVAFFINGMNAHYGSQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGNVTESE

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=258993 DP112_RS10935 WP_114866987.1 2206367..2207461(+) (recF) [Streptococcus suis strain HA1003]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGCTTTAGCTTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGGATTATCTATTTCGGGTTTACTCCATCGCGCAAGCGGTAAA
GTTCCACTTGACATTCACTTGACAGATAAGGGGCGAGTGACCAAGGTCAACCATCTCAAACAAGCAAAACTTTCTAATTA
CATTGGACATATGAACGTCGTCCTATTTGCTCCAGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAACCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCCGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTCATCCAACATCGACTTGATTTCCTCAAAAAACTAGAGGAATTTGGAAACAGGAAAGTTCAGGAAATATCTGGAA
GTCGGGAAGAATTGACAATCGAATATCAAACTTCAATTAAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACA
GAATTGGAAAAGTGTCGCAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGGTAGCCAAGGACAACATCGCAGTCTCGTTCTGTCACTCAAACTGGCTGAAATCG
AGCTGATGAAAGAAGTCACACGAGAGTATCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTGGATAATAATCGTCAA
ATCAAACTACTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATATTCCATATTGAGTCTGGTAATGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-357)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

70.36

99.176

0.698
  recF Bacillus subtilis subsp. subtilis str. 168

44.262

100

0.445