Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DP112_RS07450 Genome accession   NZ_CP030125
Coordinates   1478046..1478642 (-) Length   198 a.a.
NCBI ID   WP_002935848.1    Uniprot ID   A0ABV2ES67
Organism   Streptococcus suis strain HA1003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1473046..1483642
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP112_RS07430 (DP112_07430) - 1474661..1475329 (-) 669 WP_044681018.1 ABC transporter ATP-binding protein -
  DP112_RS07435 (DP112_07435) - 1475339..1476415 (-) 1077 WP_114866689.1 ABC transporter permease -
  DP112_RS07440 (DP112_07440) - 1476416..1476796 (-) 381 WP_114866690.1 OsmC family protein -
  DP112_RS07445 (DP112_07445) - 1476895..1477941 (-) 1047 WP_114866691.1 D-alanine--D-alanine ligase -
  DP112_RS07450 (DP112_07450) recR 1478046..1478642 (-) 597 WP_002935848.1 recombination mediator RecR Machinery gene
  DP112_RS07455 (DP112_07455) pbp2b 1478651..1480726 (-) 2076 WP_114866692.1 penicillin-binding protein PBP2B -
  DP112_RS07460 (DP112_07460) vga(F) 1480818..1482203 (-) 1386 WP_164503922.1 ABC-F type ribosomal protection protein Vga(F) -
  DP112_RS07465 (DP112_07465) vicX 1482457..1483260 (-) 804 WP_002935843.1 MBL fold metallo-hydrolase Regulator

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21693.80 Da        Isoelectric Point: 4.4757

>NTDB_id=258963 DP112_RS07450 WP_002935848.1 1478046..1478642(-) (recR) [Streptococcus suis strain HA1003]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFAKNLLAAKRDLSYCSICGNLTDQDPCAICQDSTRDQS
TILIVEDSRDVTALENIQEYHGLYHVLHGLISPMNGIGPDDINLKTLLTRLMDNEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=258963 DP112_RS07450 WP_002935848.1 1478046..1478642(-) (recR) [Streptococcus suis strain HA1003]
ATGCTTTACCCTACACCTATTGCTAAGTTAATTGATAGTTATTCTAAATTGCCAGGTATCGGTATAAAAACGGCTACCCG
TTTAGCTTTTTATACTATTGGCATGGAGGATGATGTCGTTAATGAATTTGCGAAAAATTTATTGGCAGCCAAGCGAGACC
TATCTTATTGCTCTATTTGTGGTAATTTGACAGATCAGGACCCCTGTGCCATTTGCCAGGACTCAACGCGAGACCAATCT
ACTATTTTGATTGTAGAGGATAGTCGAGATGTTACAGCTTTGGAAAATATTCAAGAATACCACGGTCTTTATCATGTCTT
GCATGGCTTGATTTCTCCCATGAATGGTATCGGACCAGATGATATTAATTTGAAAACCCTCCTCACTCGCCTGATGGACA
ATGAGGTTACAGAAGTTATTGTGGCGACCAATGCAACAGCAGATGGAGAGGCTACATCTATGTATATATCACGTGTCCTC
AAACCTGCGGGAATCAAAGTAACCCGACTAGCTCGTGGCTTAGCGGTAGGCAGTGATATTGAGTATGCAGATGAAGTGAC
CCTGTTGAGGGCTATTGAAAACCGCACAGAGCTATAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.879

100

0.879
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.744

98.485

0.49