Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   DP112_RS04855 Genome accession   NZ_CP030125
Coordinates   961922..962992 (-) Length   356 a.a.
NCBI ID   WP_114866480.1    Uniprot ID   -
Organism   Streptococcus suis strain HA1003     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 956922..967992
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP112_RS04825 (DP112_04825) - 957861..958112 (+) 252 WP_114866476.1 DUF6290 family protein -
  DP112_RS04830 (DP112_04830) - 958096..958353 (+) 258 WP_114866477.1 type II toxin-antitoxin system RelE/ParE family toxin -
  DP112_RS04835 (DP112_04835) braR 958392..959060 (+) 669 WP_161943640.1 response regulator transcription factor Regulator
  DP112_RS04840 (DP112_04840) - 959057..959998 (+) 942 WP_114866478.1 sensor histidine kinase -
  DP112_RS04845 (DP112_04845) - 960074..961582 (+) 1509 WP_114866479.1 phosphomannomutase/phosphoglucomutase -
  DP112_RS04855 (DP112_04855) xerS 961922..962992 (-) 1071 WP_114866480.1 tyrosine recombinase XerS Machinery gene
  DP112_RS04860 (DP112_04860) - 963353..964717 (-) 1365 WP_125330195.1 zinc-ribbon domain-containing protein -
  DP112_RS04870 (DP112_04870) - 965616..966473 (-) 858 WP_114866482.1 DNA/RNA non-specific endonuclease -
  DP112_RS04875 (DP112_04875) tnpA 966824..967297 (-) 474 WP_114866483.1 IS200/IS605 family transposase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41545.75 Da        Isoelectric Point: 9.2038

>NTDB_id=258946 DP112_RS04855 WP_114866480.1 961922..962992(-) (xerS) [Streptococcus suis strain HA1003]
MRRELLLEKIDQLKEIMPWYVLEYYQSKLSVPYSFTTLYEYLKEYRRFFEWLQDSDLVAVERIADIPLDVLEHLTKKDME
AFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLFKYLTEEVENEQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETMEFLDYVDKEYQVKLSKRALSSFQKNKERDLAILALLLASGVRLSEAVNLDLRDVNLNMMIIEVTRKGGKQDS
VNVAGFAKPYLEAYMSIRQQRYKAEKTDIAFFLSEYRGLPNRIDASSIEKMVAKYSADFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHANTQVTDLYTHIVNDEQKNALDQL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=258946 DP112_RS04855 WP_114866480.1 961922..962992(-) (xerS) [Streptococcus suis strain HA1003]
ATGAGACGCGAGTTATTATTGGAAAAAATTGATCAGCTGAAGGAAATTATGCCTTGGTATGTTTTGGAATATTATCAGTC
CAAGTTGTCTGTGCCTTACAGTTTTACAACCTTGTACGAATACTTGAAAGAATACCGTCGATTTTTTGAGTGGCTACAGG
ATTCAGATTTGGTAGCTGTCGAACGAATTGCTGACATTCCGCTGGATGTTCTGGAACATCTGACCAAGAAAGATATGGAG
GCTTTTATTCTTTATCTGCGGGAGCGTCCCTTGCTGAACGCCAATACTACGCAGAATGGTGTGTCGCAGACCACCATTAA
TCGTACCCTGTCGGCACTTTCTAGCCTCTTCAAGTATTTAACCGAAGAAGTGGAAAATGAGCAGGGCGAGCCCTACTTCT
ACCGCAACGTCATGAAGAAGGTGTCGACCAAGAAGAAGAAAGAAACCTTGGCGGCTCGGGCGGAGAACATCAAGCAAAAG
CTCTTTTTGGGCGATGAAACGATGGAGTTCTTGGACTATGTCGATAAAGAATACCAGGTAAAGTTATCCAAACGTGCCCT
CTCATCCTTCCAGAAAAATAAGGAGCGGGATTTGGCGATTCTGGCACTTCTCTTGGCTTCTGGCGTCCGTCTGTCAGAAG
CGGTGAATTTGGACCTTCGAGATGTAAACCTCAATATGATGATTATCGAAGTAACCCGTAAGGGGGGGAAACAGGACTCG
GTCAATGTAGCTGGTTTTGCTAAGCCCTATCTGGAAGCCTATATGAGCATTCGTCAGCAACGCTACAAGGCTGAAAAAAC
GGATATAGCCTTCTTCTTGTCTGAATACCGTGGTCTGCCCAATCGTATCGACGCTTCTTCTATCGAAAAAATGGTTGCCA
AATATTCTGCGGACTTCAAGATACGTGTGACACCCCACAAACTCCGTCACACGCTGGCAACACGGCTCTACGACGCCACC
AAGTCGCAAGTTCTGGTCAGTCATCAGCTGGGGCACGCCAATACCCAGGTAACCGACCTCTATACCCATATCGTCAACGA
TGAGCAGAAAAATGCTCTGGATCAGTTGTGA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(190-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

82.584

100

0.826