Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   DP112_RS04835 Genome accession   NZ_CP030125
Coordinates   958392..959060 (+) Length   222 a.a.
NCBI ID   WP_161943640.1    Uniprot ID   -
Organism   Streptococcus suis strain HA1003     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 953392..964060
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP112_RS11075 - 953512..953649 (+) 138 WP_164503912.1 hypothetical protein -
  DP112_RS04800 (DP112_04800) - 953662..954396 (+) 735 WP_114866472.1 TraX family protein -
  DP112_RS04805 (DP112_04805) - 954495..954635 (+) 141 WP_114866473.1 hypothetical protein -
  DP112_RS04810 (DP112_04810) - 954648..955037 (+) 390 WP_114866474.1 NisI/SpaI family lantibiotic immunity lipoprotein -
  DP112_RS04815 (DP112_04815) - 955046..955798 (+) 753 WP_024407069.1 ABC transporter ATP-binding protein -
  DP112_RS04820 (DP112_04820) - 955799..957769 (+) 1971 WP_114866475.1 FtsX-like permease family protein -
  DP112_RS04825 (DP112_04825) - 957861..958112 (+) 252 WP_114866476.1 DUF6290 family protein -
  DP112_RS04830 (DP112_04830) - 958096..958353 (+) 258 WP_114866477.1 type II toxin-antitoxin system RelE/ParE family toxin -
  DP112_RS04835 (DP112_04835) braR 958392..959060 (+) 669 WP_161943640.1 response regulator transcription factor Regulator
  DP112_RS04840 (DP112_04840) - 959057..959998 (+) 942 WP_114866478.1 sensor histidine kinase -
  DP112_RS04845 (DP112_04845) - 960074..961582 (+) 1509 WP_114866479.1 phosphomannomutase/phosphoglucomutase -
  DP112_RS04855 (DP112_04855) xerS 961922..962992 (-) 1071 WP_114866480.1 tyrosine recombinase XerS Machinery gene

Sequence

Protein


Download         Length: 222 a.a.        Molecular weight: 25537.36 Da        Isoelectric Point: 4.7736

>NTDB_id=258945 DP112_RS04835 WP_161943640.1 958392..959060(+) (braR) [Streptococcus suis strain HA1003]
MMKKEKIYIVEDDEMIVQLLKQHLGKSYQVESVQNFRAVSQEVAEIKPDLVLMDISLPYYNGFYWTTEIRKTMTMPIIFI
SSSDDEMNAVMAMNMGGDDFVSKPFSLGILDAKIGAFLRRVNQFSKTTDLSIDQFQLSLDGRFSSESEQVQLSPTETKIL
SALLERQGQIVSKEELLEKLWENEEFIDQNTLNVNMTRLRKKVSEVGFDRIHTVRGVGYLVK

Nucleotide


Download         Length: 669 bp        

>NTDB_id=258945 DP112_RS04835 WP_161943640.1 958392..959060(+) (braR) [Streptococcus suis strain HA1003]
ATGATGAAAAAAGAGAAGATTTATATTGTTGAAGATGATGAGATGATCGTCCAACTCTTGAAGCAGCATTTGGGAAAATC
TTATCAGGTAGAAAGTGTGCAGAATTTCCGTGCTGTCAGTCAGGAAGTGGCGGAAATCAAACCAGACTTGGTGCTGATGG
ATATTAGCCTACCCTATTACAACGGCTTTTATTGGACGACAGAGATCCGTAAAACCATGACTATGCCCATTATCTTTATC
TCCTCTAGCGATGATGAGATGAATGCAGTCATGGCTATGAACATGGGTGGCGATGATTTTGTGTCCAAGCCTTTTTCACT
GGGGATTTTGGATGCCAAAATCGGTGCCTTCCTGCGTCGAGTCAATCAATTCAGCAAAACAACTGACTTGTCGATCGACC
AGTTCCAGCTTAGTTTGGATGGGCGTTTTTCAAGCGAATCGGAACAGGTTCAGCTTTCACCTACTGAAACCAAAATTTTG
TCCGCCTTACTAGAACGACAAGGGCAGATTGTCAGTAAGGAAGAACTCTTGGAAAAACTCTGGGAAAATGAAGAATTTAT
CGATCAGAATACCCTCAATGTCAACATGACTCGTCTGCGTAAGAAGGTGAGTGAAGTGGGATTCGACCGTATTCATACTG
TTCGTGGCGTGGGGTACCTGGTCAAATGA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-220)

Response regulator receiver domain (Response_reg)

(7-112)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

47.727

99.099

0.473