Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   DP111_RS11090 Genome accession   NZ_CP030124
Coordinates   2200903..2201997 (+) Length   364 a.a.
NCBI ID   WP_012028050.1    Uniprot ID   A0A0H3N2H6
Organism   Streptococcus suis strain SH1510     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2195903..2206997
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DP111_RS11065 (DP111_11065) pgsA 2196422..2196961 (-) 540 WP_014736596.1 CDP-diacylglycerol--glycerol-3-phosphate 3-phosphatidyltransferase -
  DP111_RS11070 (DP111_11070) rodZ 2196971..2197828 (-) 858 WP_024394581.1 cytoskeleton protein RodZ -
  DP111_RS11075 (DP111_11075) - 2197910..2199193 (-) 1284 WP_024394582.1 pitrilysin family protein -
  DP111_RS11080 (DP111_11080) - 2199190..2200443 (-) 1254 WP_009911054.1 pitrilysin family protein -
  DP111_RS11085 (DP111_11085) yaaA 2200517..2200900 (+) 384 WP_024394583.1 S4 domain-containing protein YaaA -
  DP111_RS11090 (DP111_11090) recF 2200903..2201997 (+) 1095 WP_012028050.1 DNA replication/repair protein RecF Machinery gene
  DP111_RS11095 (DP111_11095) guaB 2202269..2203750 (-) 1482 WP_014637236.1 IMP dehydrogenase -
  DP111_RS11100 (DP111_11100) trpS 2203982..2205007 (-) 1026 WP_013730696.1 tryptophan--tRNA ligase -
  DP111_RS11105 (DP111_11105) - 2205362..2206234 (+) 873 WP_013730698.1 YitT family protein -

Sequence

Protein


Download         Length: 364 a.a.        Molecular weight: 42188.24 Da        Isoelectric Point: 6.9173

>NTDB_id=258895 DP111_RS11090 WP_012028050.1 2200903..2201997(+) (recF) [Streptococcus suis strain SH1510]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIELTDDVNLIDKFLT
ELEKSRKRDLFKKNTGVGPHRDDVAFFINGMNAHYASQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide


Download         Length: 1095 bp        

>NTDB_id=258895 DP111_RS11090 WP_012028050.1 2200903..2201997(+) (recF) [Streptococcus suis strain SH1510]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGACGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA
TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAGCCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCTGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCGAATACCAGACCTCAATCGAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG
GAACTAGAAAAGTCTCGTAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGCTAGCCAAGGTCAGCACCGCAGTCTCGTTCTGTCACTCAAACTAGCTGAAATTG
AGCTGATGAAAGAAGTCACACGAGAGTACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTGGATAATAATCGTCAA
ATCAAACTATTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(3-358)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3N2H6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Streptococcus pneumoniae R6

70.36

99.176

0.698
  recF Bacillus subtilis subsp. subtilis str. 168

43.514

100

0.442