Detailed information
Bioinformatically predicted
Overview
| Name | ssb | Type | Machinery gene |
| Locus tag | CXB72_RS00040 | Genome accession | NZ_CP025200 |
| Coordinates | 9245..9763 (+) | Length | 172 a.a. |
| NCBI ID | WP_125977530.1 | Uniprot ID | - |
| Organism | Lactobacillus acidophilus strain YT1 | ||
| Function | ssDNA binding (predicted from homology) DNA processing |
||
Genomic Context
Location: 4245..14763
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| CXB72_RS00025 (CXB72_00025) | gyrB | 4253..6217 (+) | 1965 | WP_003549374.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B | - |
| CXB72_RS00030 (CXB72_00030) | gyrA | 6228..8702 (+) | 2475 | WP_003549372.1 | DNA gyrase subunit A | - |
| CXB72_RS00035 (CXB72_00035) | rpsF | 8903..9199 (+) | 297 | WP_003549370.1 | 30S ribosomal protein S6 | - |
| CXB72_RS00040 (CXB72_00040) | ssb | 9245..9763 (+) | 519 | WP_125977530.1 | single-stranded DNA-binding protein | Machinery gene |
| CXB72_RS00045 (CXB72_00045) | rpsR | 9792..10028 (+) | 237 | WP_003549366.1 | 30S ribosomal protein S18 | - |
| CXB72_RS00050 (CXB72_00050) | - | 10207..12228 (+) | 2022 | WP_003549345.1 | DHH family phosphoesterase | - |
| CXB72_RS00055 (CXB72_00055) | rplI | 12241..12696 (+) | 456 | WP_125977532.1 | 50S ribosomal protein L9 | - |
| CXB72_RS00060 (CXB72_00060) | dnaB | 12722..14116 (+) | 1395 | WP_125977534.1 | replicative DNA helicase | - |
Sequence
Protein
Download Length: 172 a.a. Molecular weight: 18884.56 Da Isoelectric Point: 4.7317
>NTDB_id=258737 CXB72_RS00040 WP_125977530.1 9245..9763(+) (ssb) [Lactobacillus acidophilus strain YT1]
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNSQGERGADFISCVIWRKAAENFCNFTSKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVVVDNFSLLESRKDREARGQNGGYTPNNGNINNQPVNNFQNNGGSQNNPQINNNQSSSQDPFAGSG
DTIDISDDDLPF
MINRVVLVGRLTRDPELRTTGSGISVATFTLAVDRQFTNSQGERGADFISCVIWRKAAENFCNFTSKGSLVGIDGRIQTR
SYDNKDGQRVYVTEVVVDNFSLLESRKDREARGQNGGYTPNNGNINNQPVNNFQNNGGSQNNPQINNNQSSSQDPFAGSG
DTIDISDDDLPF
Nucleotide
Download Length: 519 bp
>NTDB_id=258737 CXB72_RS00040 WP_125977530.1 9245..9763(+) (ssb) [Lactobacillus acidophilus strain YT1]
ATGATTAATAGAGTTGTACTTGTTGGCCGATTAACACGTGATCCTGAATTGCGTACTACTGGAAGTGGAATTTCGGTAGC
TACGTTTACTCTTGCTGTTGACCGTCAATTTACAAATAGTCAGGGTGAGAGAGGCGCAGACTTTATCAGCTGTGTAATCT
GGAGAAAGGCTGCGGAAAACTTCTGTAACTTTACTTCAAAAGGTTCATTAGTTGGTATTGATGGCCGTATTCAAACCAGA
AGCTATGACAATAAAGATGGGCAACGAGTATATGTAACTGAAGTTGTTGTTGATAACTTCTCATTACTTGAATCACGTAA
GGATCGTGAAGCCCGCGGTCAAAATGGTGGATATACACCAAATAATGGAAATATTAACAATCAACCTGTTAATAATTTCC
AGAATAATGGTGGATCACAAAATAATCCACAGATTAATAACAATCAAAGTTCTTCACAAGATCCATTTGCTGGATCAGGT
GATACTATTGATATTTCTGATGATGATCTTCCATTCTAA
ATGATTAATAGAGTTGTACTTGTTGGCCGATTAACACGTGATCCTGAATTGCGTACTACTGGAAGTGGAATTTCGGTAGC
TACGTTTACTCTTGCTGTTGACCGTCAATTTACAAATAGTCAGGGTGAGAGAGGCGCAGACTTTATCAGCTGTGTAATCT
GGAGAAAGGCTGCGGAAAACTTCTGTAACTTTACTTCAAAAGGTTCATTAGTTGGTATTGATGGCCGTATTCAAACCAGA
AGCTATGACAATAAAGATGGGCAACGAGTATATGTAACTGAAGTTGTTGTTGATAACTTCTCATTACTTGAATCACGTAA
GGATCGTGAAGCCCGCGGTCAAAATGGTGGATATACACCAAATAATGGAAATATTAACAATCAACCTGTTAATAATTTCC
AGAATAATGGTGGATCACAAAATAATCCACAGATTAATAACAATCAAAGTTCTTCACAAGATCCATTTGCTGGATCAGGT
GATACTATTGATATTTCTGATGATGATCTTCCATTCTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| ssb | Latilactobacillus sakei subsp. sakei 23K |
63.006 |
100 |
0.634 |
| ssbA | Bacillus subtilis subsp. subtilis str. 168 |
54.494 |
100 |
0.564 |