Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilS   Type   Regulator
Locus tag   CXB48_RS18800 Genome accession   NZ_CP025149
Coordinates   3905519..3907111 (+) Length   530 a.a.
NCBI ID   WP_108242334.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain SGAir0442     
Function   regulate pilin expression (predicted from homology)   
Competence regulation

Genomic Context

Location: 3900519..3912111
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXB48_RS18780 (CXB48_18720) pgeF 3902272..3903009 (-) 738 WP_017244513.1 peptidoglycan editing factor PgeF -
  CXB48_RS18785 (CXB48_18725) rluD 3903006..3903980 (-) 975 WP_011914661.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  CXB48_RS18790 (CXB48_18730) - 3904185..3905174 (+) 990 WP_013984073.1 outer membrane protein assembly factor BamD -
  CXB48_RS18795 (CXB48_18735) - 3905296..3905529 (+) 234 WP_013984074.1 PP0621 family protein -
  CXB48_RS18800 (CXB48_18740) pilS 3905519..3907111 (+) 1593 WP_108242334.1 sensor histidine kinase Regulator
  CXB48_RS18805 (CXB48_18745) pilR 3907242..3908579 (+) 1338 WP_026006503.1 sigma-54-dependent transcriptional regulator Regulator
  CXB48_RS18810 (CXB48_18750) - 3908623..3909681 (-) 1059 WP_011914666.1 DUF2333 family protein -
  CXB48_RS18815 (CXB48_18755) - 3909900..3911495 (+) 1596 WP_011914667.1 diguanylate cyclase -

Sequence

Protein


Download         Length: 530 a.a.        Molecular weight: 58877.98 Da        Isoelectric Point: 8.4613

>NTDB_id=258686 CXB48_RS18800 WP_108242334.1 3905519..3907111(+) (pilS) [Stutzerimonas stutzeri strain SGAir0442]
MGTENLTFFGDQGRRILRLYHLYRLTIGLALVLLISSDLHNDLLQMSNPQLFQYGAWLYLILNIIVAVLVQSPKRDLPVL
SLALMDVILLSGLFYFGGGTPSGIGNLLIVAVAIANILLRGRVGFFIAAVAATGLIYLTFYLSISRSEASSQYVQAGALG
TLCFAAAFLVQGLTRRLQVSETLARQRAEEVANLEALNALILQRMRTGIMVLDPQERVLLANQGALQLLGQESLAGERLA
PRCPELVKALQHWRGNPTLRPPNLKATPGGPTLQPSFAALQHGNKLDTLVFLEDISQIAQKAQQLKLASLGRLTASIAHE
IRNPLGAISHAAQLLQESEELDGPDRRLAQIIQDHSRRMNLVIENVLQLSRRRQAEPQLLDLKYWLHRFVSEFRQGLSPQ
QTVHLETIGSSLQTRMDPNQLTQVLTNLVQNGLRYSGKEHDRAQVWLRLFRDEASDLPVVEVLDDGPGIAAEQLHNVFEP
FFTTESKGTGLGLYISRELCESNQARLDYRERAEGGSCFRIVFAHPRKLS

Nucleotide


Download         Length: 1593 bp        

>NTDB_id=258686 CXB48_RS18800 WP_108242334.1 3905519..3907111(+) (pilS) [Stutzerimonas stutzeri strain SGAir0442]
GTGGGCACTGAGAACCTCACCTTCTTCGGCGACCAGGGGCGGCGCATCCTTCGCCTGTATCACCTCTACCGCCTGACCAT
TGGCCTCGCGCTGGTGCTGCTGATCAGCAGCGACCTGCACAACGATCTGCTGCAGATGAGCAATCCGCAGCTGTTCCAGT
ACGGCGCCTGGCTCTATCTGATCCTCAACATCATCGTCGCGGTGCTGGTGCAGAGCCCCAAGCGCGACCTGCCAGTGCTC
AGCCTGGCGCTGATGGACGTGATCCTGCTGTCGGGATTGTTCTATTTTGGCGGAGGAACGCCGAGCGGCATCGGCAACCT
GCTGATCGTCGCCGTCGCCATCGCCAATATTCTCCTGCGGGGGCGGGTCGGTTTCTTCATCGCCGCGGTCGCTGCCACCG
GCCTGATCTATCTGACCTTCTACCTGAGCATCAGTCGTTCCGAAGCCAGCAGCCAGTACGTCCAGGCCGGTGCGCTCGGC
ACGCTGTGCTTCGCCGCAGCCTTTCTCGTCCAGGGACTGACTCGGCGCCTTCAGGTCAGCGAGACTCTGGCCCGCCAGCG
CGCCGAGGAGGTCGCCAACCTCGAGGCCCTCAACGCGCTGATCCTGCAGCGCATGCGCACCGGCATCATGGTGTTGGACC
CGCAGGAGCGCGTGCTCCTGGCCAACCAGGGGGCGCTGCAGTTGCTCGGCCAGGAATCGCTGGCCGGCGAGCGCCTCGCG
CCGCGCTGCCCGGAGCTGGTCAAGGCACTGCAGCACTGGCGTGGCAATCCCACACTGCGCCCGCCGAACCTCAAGGCCAC
CCCCGGCGGACCGACGCTGCAGCCGAGTTTCGCCGCCCTGCAGCACGGCAACAAGCTCGACACTCTGGTGTTCCTCGAGG
ACATCTCGCAGATCGCCCAGAAGGCCCAGCAACTCAAGCTCGCCTCCCTCGGACGACTCACAGCCAGCATTGCCCATGAA
ATCCGCAATCCGCTGGGCGCCATCAGCCATGCTGCTCAACTGCTACAGGAATCCGAAGAGCTGGACGGCCCGGATCGGCG
GCTGGCGCAGATCATCCAGGACCACTCGCGGCGGATGAATCTGGTCATCGAGAACGTGCTGCAGCTTTCCCGGCGCCGCC
AGGCGGAGCCCCAGCTGCTGGATCTCAAATACTGGCTGCATCGCTTCGTCAGCGAGTTCCGCCAGGGGCTCAGCCCGCAG
CAGACGGTTCACCTGGAAACCATCGGCAGCTCGCTGCAGACGCGCATGGACCCCAACCAGCTGACCCAGGTGCTCACCAA
CCTGGTGCAGAACGGCCTGCGCTACAGCGGCAAGGAGCACGATCGCGCTCAGGTCTGGCTCCGCCTGTTTCGCGACGAAG
CCAGCGATCTGCCGGTCGTTGAGGTCCTCGACGATGGGCCCGGCATCGCCGCCGAGCAGTTGCACAACGTTTTCGAACCC
TTCTTCACCACCGAGAGCAAAGGCACCGGGCTCGGGCTGTACATCTCCCGCGAGCTGTGCGAGAGCAACCAGGCACGCCT
GGACTACCGCGAGCGCGCCGAAGGCGGCAGCTGCTTCCGCATCGTCTTCGCGCACCCGCGCAAGCTGAGCTAG

Domains

Predicted by InterproScan.

His Kinase A (phospho-acceptor) domain (HisKA)

(309-373)

Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase (HATPase_c)

(417-523)

PAS domain (PAS_8)

(202-240)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilS Pseudomonas aeruginosa PAK

66.604

100

0.666

Multiple sequence alignment