Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilV   Type   Machinery gene
Locus tag   CXB48_RS04605 Genome accession   NZ_CP025149
Coordinates   955898..956455 (-) Length   185 a.a.
NCBI ID   WP_049339043.1    Uniprot ID   -
Organism   Stutzerimonas stutzeri strain SGAir0442     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 950898..961455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CXB48_RS04595 (CXB48_04580) - 954448..955053 (-) 606 WP_108241514.1 PilX N-terminal domain-containing pilus assembly protein -
  CXB48_RS04600 (CXB48_04585) - 955050..955901 (-) 852 WP_108241515.1 PilW family protein -
  CXB48_RS04605 (CXB48_04590) pilV 955898..956455 (-) 558 WP_049339043.1 type IV pilus modification protein PilV Machinery gene
  CXB48_RS04610 (CXB48_04595) - 956464..956955 (-) 492 WP_045159204.1 GspH/FimT family pseudopilin -
  CXB48_RS04615 (CXB48_04600) - 957123..957617 (-) 495 WP_045159205.1 GspH/FimT family pseudopilin -
  CXB48_RS04620 (CXB48_04605) thiO 957771..958868 (+) 1098 WP_108241516.1 glycine oxidase ThiO -
  CXB48_RS04625 (CXB48_04610) - 959017..959388 (+) 372 WP_013981879.1 translation initiation factor Sui1 -
  CXB48_RS04630 (CXB48_04615) speA 959511..961424 (+) 1914 WP_108241517.1 arginine decarboxylase -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 20197.00 Da        Isoelectric Point: 4.8297

>NTDB_id=258669 CXB48_RS04605 WP_049339043.1 955898..956455(-) (pilV) [Stutzerimonas stutzeri strain SGAir0442]
MKTNKGFSLIEVLVALLLTTIGVLGMVALQGRSIQYTQDSVQRNTAILLSGDLIEIIRAHPKELFNTSPPKFPMNSGLKS
SSMFYKEAGSDFIDRESCVASPTRIAQTAKELRDCWADKVEAALPGGAELFDSDTYICRSSKPGSCDGQGSMLEIHMAWQ
VREGACPDPNNTDDTVCTYTVRVEP

Nucleotide


Download         Length: 558 bp        

>NTDB_id=258669 CXB48_RS04605 WP_049339043.1 955898..956455(-) (pilV) [Stutzerimonas stutzeri strain SGAir0442]
ATGAAAACCAATAAAGGCTTCAGCCTGATCGAAGTGCTCGTAGCGCTACTGCTGACCACCATCGGAGTACTTGGAATGGT
GGCGCTGCAAGGCCGCAGCATCCAATACACCCAGGACTCCGTACAACGCAACACGGCCATTCTTCTGTCCGGAGACCTTA
TCGAAATCATACGGGCACACCCGAAAGAGCTCTTCAACACCTCCCCTCCAAAGTTCCCCATGAACAGCGGGTTAAAAAGC
AGCTCGATGTTCTACAAGGAGGCCGGAAGCGATTTCATTGATCGTGAAAGCTGCGTCGCTAGCCCGACCCGAATAGCGCA
GACAGCAAAAGAGTTGCGTGACTGCTGGGCGGACAAGGTGGAAGCAGCGCTACCTGGCGGAGCCGAGCTGTTCGACAGCG
ATACCTACATCTGCCGAAGCTCCAAGCCGGGCAGTTGCGACGGCCAGGGCTCGATGCTCGAGATTCATATGGCCTGGCAA
GTTCGAGAAGGCGCCTGTCCCGACCCGAACAATACCGACGACACCGTCTGCACCTATACCGTTCGGGTAGAACCATGA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(1-26)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilV Pseudomonas aeruginosa PAK

49.727

98.919

0.492

Multiple sequence alignment