Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DOU34_RS18635 Genome accession   NZ_CP030097
Coordinates   3745573..3746169 (+) Length   198 a.a.
NCBI ID   WP_003150697.1    Uniprot ID   A7Z0E4
Organism   Bacillus amyloliquefaciens strain SH-B74     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3740573..3751169
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOU34_RS18610 - 3741920..3742432 (-) 513 WP_042635751.1 isochorismatase family cysteine hydrolase -
  DOU34_RS18615 tadA 3742554..3743036 (+) 483 WP_007408751.1 tRNA adenosine(34) deaminase TadA -
  DOU34_RS18625 dnaX 3743519..3745210 (+) 1692 WP_007408753.1 DNA polymerase III subunit gamma/tau -
  DOU34_RS18630 - 3745235..3745558 (+) 324 WP_007408754.1 YbaB/EbfC family nucleoid-associated protein -
  DOU34_RS18635 recR 3745573..3746169 (+) 597 WP_003150697.1 recombination protein RecR Machinery gene
  DOU34_RS18640 - 3746188..3746412 (+) 225 WP_007408755.1 YaaL family protein -
  DOU34_RS18645 - 3746473..3746736 (+) 264 WP_003150686.1 pro-sigmaK processing inhibitor BofA family protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21990.53 Da        Isoelectric Point: 5.3504

>NTDB_id=258625 DOU34_RS18635 WP_003150697.1 3745573..3746169(+) (recR) [Bacillus amyloliquefaciens strain SH-B74]
MQYPEPISKLIDSFMKLPGIGPKTAVRLAFFVLGMKEDTVLDFAKALVNAKRNLTYCSICGHITDQDPCYICEDTRRDKS
VICVVQDPKDVIAMEKMKEYNGQYHVLHGAISPMDGIGPEDIKIPELLKRLQDDQVTEVILATNPNIEGEATAMYISRLL
KPSGIKLSRIAHGLPVGGDLEYADEVTLSKALEGRREL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=258625 DOU34_RS18635 WP_003150697.1 3745573..3746169(+) (recR) [Bacillus amyloliquefaciens strain SH-B74]
ATGCAGTATCCTGAACCAATATCAAAGCTGATTGACAGCTTTATGAAATTGCCAGGGATCGGACCGAAAACAGCGGTTCG
TCTGGCTTTTTTTGTTCTAGGTATGAAAGAAGACACAGTATTGGATTTTGCTAAGGCGCTTGTCAATGCGAAGCGGAATC
TGACATATTGCTCGATTTGCGGACATATAACAGATCAGGACCCTTGTTATATATGTGAGGACACAAGAAGGGATAAGTCT
GTTATTTGTGTCGTGCAGGACCCTAAGGATGTGATCGCAATGGAGAAAATGAAGGAATATAACGGCCAGTATCATGTTCT
TCACGGCGCGATTTCACCAATGGATGGCATCGGCCCGGAGGATATTAAGATTCCGGAGCTGCTGAAACGTCTTCAGGATG
ATCAAGTGACAGAAGTTATTCTCGCAACCAACCCTAATATTGAAGGGGAAGCAACAGCGATGTATATATCAAGGCTGTTA
AAGCCCTCAGGCATCAAGCTCTCCCGTATTGCCCACGGTCTGCCCGTCGGCGGTGATTTGGAATATGCTGATGAGGTCAC
TCTTTCAAAAGCTCTTGAAGGAAGACGTGAATTGTAA

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z0E4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Bacillus subtilis subsp. subtilis str. 168

98.99

100

0.99
  recR Streptococcus pneumoniae R6

62.626

100

0.626
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

52.551

98.99

0.52