Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   DOU34_RS14500 Genome accession   NZ_CP030097
Coordinates   2938556..2939188 (-) Length   210 a.a.
NCBI ID   WP_007410060.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SH-B74     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 2933556..2944188
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOU34_RS14480 - 2934582..2934767 (-) 186 WP_003151806.1 YvzF family protein -
  DOU34_RS14485 - 2934884..2936326 (+) 1443 WP_020954311.1 spore germination protein -
  DOU34_RS14490 - 2936301..2937401 (+) 1101 WP_061047093.1 spore germination protein -
  DOU34_RS14495 - 2937398..2938513 (+) 1116 WP_007410061.1 Ger(x)C family spore germination protein -
  DOU34_RS14500 vraR 2938556..2939188 (-) 633 WP_007410060.1 response regulator transcription factor Regulator
  DOU34_RS14505 liaS 2939166..2940248 (-) 1083 WP_003151796.1 two-component system sensor histidine kinase LiaS -
  DOU34_RS14510 liaF 2940245..2940976 (-) 732 WP_003151794.1 cell wall-active antibiotics response protein LiaF -
  DOU34_RS14515 - 2941003..2941872 (-) 870 WP_007410058.1 DUF4097 domain-containing protein -
  DOU34_RS14520 - 2941978..2942655 (-) 678 WP_007410057.1 PspA/IM30 family protein -
  DOU34_RS14525 - 2942669..2943049 (-) 381 WP_007410056.1 protein liaI -

Sequence

Protein


Download         Length: 210 a.a.        Molecular weight: 22963.64 Da        Isoelectric Point: 4.9953

>NTDB_id=258597 DOU34_RS14500 WP_007410060.1 2938556..2939188(-) (vraR) [Bacillus amyloliquefaciens strain SH-B74]
MIRVLLIDDHEMVRMGLAAFLEAQPDIEVAGEASDGQQGVDLAAKLLPDVILMDLVMDGMDGIEATKQICATLNDPKIIV
LTSFIDDDKVYPVIEAGALSYLLKTSKAAEIAEAIRAAAKGEPKLESKVAGKVLSRLRHSENQLPHETLTKRELEILCLV
AEGKTNKEIGEELFITIKTVKTHITNILSKLDVSDRTQAAVYAHRNHLVT

Nucleotide


Download         Length: 633 bp        

>NTDB_id=258597 DOU34_RS14500 WP_007410060.1 2938556..2939188(-) (vraR) [Bacillus amyloliquefaciens strain SH-B74]
GTGATTCGAGTGTTACTGATTGATGATCATGAAATGGTCAGGATGGGTCTGGCCGCATTTTTAGAAGCACAGCCGGACAT
TGAAGTCGCCGGTGAAGCATCAGACGGGCAGCAGGGCGTCGATCTGGCCGCAAAGCTTTTGCCGGATGTGATTTTAATGG
ACCTCGTCATGGACGGCATGGACGGTATCGAAGCGACAAAACAGATCTGCGCGACACTCAATGACCCGAAAATCATCGTG
CTGACGAGCTTTATTGATGACGACAAAGTGTATCCGGTGATCGAAGCGGGAGCGCTCAGCTATTTGCTGAAAACGTCCAA
GGCGGCAGAAATAGCCGAAGCCATCAGAGCGGCTGCCAAGGGCGAACCGAAGCTTGAATCGAAGGTGGCGGGAAAAGTGC
TGTCAAGGCTGCGCCATTCAGAGAATCAGCTTCCGCATGAAACGCTGACAAAAAGAGAACTGGAAATCCTCTGTCTCGTC
GCGGAAGGCAAGACGAATAAAGAGATTGGTGAAGAGCTGTTCATTACGATTAAAACGGTGAAAACCCACATTACGAATAT
ATTGTCAAAGCTTGATGTCAGTGACCGCACGCAGGCAGCCGTATATGCCCACCGCAATCATCTCGTGACATAA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(4-116)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

50

99.048

0.495
  degU Bacillus subtilis subsp. subtilis str. 168

36.771

100

0.39

Multiple sequence alignment