Detailed information    

insolico Bioinformatically predicted

Overview

Name   dinR/lexA   Type   Regulator
Locus tag   DOU34_RS07955 Genome accession   NZ_CP030097
Coordinates   1616004..1616624 (-) Length   206 a.a.
NCBI ID   WP_007611720.1    Uniprot ID   A0AAI8HP04
Organism   Bacillus amyloliquefaciens strain SH-B74     
Function   repressor of recA; repressor of dinR (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1611004..1621624
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOU34_RS07925 - 1611869..1612303 (+) 435 WP_003154017.1 dUTP diphosphatase -
  DOU34_RS07935 - 1612710..1613531 (+) 822 WP_061046757.1 poly-gamma-glutamate hydrolase family protein -
  DOU34_RS20895 - 1613640..1613789 (+) 150 WP_007410334.1 hypothetical protein -
  DOU34_RS07940 - 1613776..1614606 (+) 831 WP_007410333.1 prohibitin family protein -
  DOU34_RS07945 - 1614634..1615083 (-) 450 WP_003154009.1 YndM family protein -
  DOU34_RS07950 - 1615237..1615665 (+) 429 WP_032871574.1 hypothetical protein -
  DOU34_RS07955 dinR/lexA 1616004..1616624 (-) 621 WP_007611720.1 transcriptional repressor LexA Regulator
  DOU34_RS07960 yneA 1616781..1617092 (+) 312 WP_003154001.1 cell division suppressor protein YneA -
  DOU34_RS07965 - 1617108..1617758 (+) 651 WP_061046756.1 recombinase family protein -
  DOU34_RS07970 - 1617827..1618060 (+) 234 WP_003153997.1 DUF896 domain-containing protein -
  DOU34_RS07975 recP/tkt 1618227..1620230 (+) 2004 WP_061046755.1 transketolase Machinery gene
  DOU34_RS07980 sirA 1620382..1620828 (+) 447 WP_003153995.1 sporulation inhibitor of replication protein SirA -
  DOU34_RS07985 - 1620914..1621132 (+) 219 WP_003153994.1 YneF family protein -
  DOU34_RS07990 - 1621206..1621379 (-) 174 WP_012117647.1 aspartyl-phosphate phosphatase Spo0E family protein -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23046.64 Da        Isoelectric Point: 5.1645

>NTDB_id=258553 DOU34_RS07955 WP_007611720.1 1616004..1616624(-) (dinR/lexA) [Bacillus amyloliquefaciens strain SH-B74]
MTKLSKRQLDILRFIKEEVKTKGYPPSVREIGEAVGLASSSTVHGHLARLETKGLIRRDPTKPRAIEVLDEEEVQIPKSQ
VVNVPVIGKVTAGIPITAVENIDEYFPLPDRMVPPGEHVFMLEIMGESMIDAGIFDKDYVIVKQQNTANNGEIVVAMTED
DEATVKRFYKEDNYVRLQPENPTMEPIILQNVSILGKVIGVFRAVH

Nucleotide


Download         Length: 621 bp        

>NTDB_id=258553 DOU34_RS07955 WP_007611720.1 1616004..1616624(-) (dinR/lexA) [Bacillus amyloliquefaciens strain SH-B74]
ATGACGAAGCTATCAAAAAGGCAGCTTGATATCCTGCGTTTTATTAAAGAAGAGGTAAAAACGAAAGGATATCCGCCTTC
TGTAAGAGAGATAGGAGAAGCAGTAGGACTGGCTTCCAGTTCAACCGTGCACGGCCATTTGGCGCGGCTGGAGACAAAAG
GCCTGATCAGACGGGACCCAACTAAACCGAGGGCGATTGAGGTATTGGATGAAGAAGAAGTCCAAATTCCGAAAAGCCAG
GTCGTAAACGTTCCGGTCATCGGGAAAGTGACGGCGGGTATTCCGATTACGGCTGTTGAAAATATCGACGAGTATTTTCC
GCTTCCTGACCGGATGGTTCCTCCGGGCGAACATGTCTTTATGTTAGAAATCATGGGAGAAAGTATGATCGACGCCGGCA
TTTTTGACAAAGATTACGTCATTGTCAAACAGCAGAACACGGCCAATAACGGAGAAATCGTCGTAGCTATGACCGAAGAT
GATGAAGCGACGGTCAAGCGCTTCTATAAAGAAGACAATTATGTGCGGCTGCAGCCGGAAAATCCGACGATGGAGCCGAT
TATCCTGCAAAACGTAAGCATTTTGGGGAAAGTTATCGGCGTATTCAGAGCCGTACATTAA

Domains

Predicted by InterProScan.

Peptidase S24-like (Peptidase_S24)

(85-199)

LexA DNA binding domain (LexA_DNA_bind)

(1-65)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0AAI8HP04

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  dinR/lexA Bacillus subtilis subsp. subtilis str. 168

92.718

100

0.927