Detailed information    

insolico Bioinformatically predicted

Overview

Name   ymcA   Type   Regulator
Locus tag   DOU34_RS07525 Genome accession   NZ_CP030097
Coordinates   1477896..1478327 (+) Length   143 a.a.
NCBI ID   WP_003154113.1    Uniprot ID   A7Z4X3
Organism   Bacillus amyloliquefaciens strain SH-B74     
Function   accelerate the production of Spo0A~P (predicted from homology)   
Competence regulation

Genomic Context

Location: 1472896..1483327
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOU34_RS07505 spoVS 1473466..1473726 (+) 261 WP_003154135.1 stage V sporulation protein SpoVS -
  DOU34_RS07510 tdh 1473984..1475030 (+) 1047 WP_032866039.1 L-threonine 3-dehydrogenase -
  DOU34_RS07515 - 1475043..1476221 (+) 1179 WP_113629803.1 glycine C-acetyltransferase -
  DOU34_RS07520 miaB 1476364..1477893 (+) 1530 WP_012117585.1 tRNA (N6-isopentenyl adenosine(37)-C2)-methylthiotransferase MiaB -
  DOU34_RS07525 ymcA 1477896..1478327 (+) 432 WP_003154113.1 RicAFT regulatory complex protein RicA family protein Regulator
  DOU34_RS07530 cotE 1478580..1479125 (+) 546 WP_003154111.1 outer spore coat protein CotE -
  DOU34_RS07535 hexA 1479244..1481829 (+) 2586 WP_007409829.1 DNA mismatch repair protein MutS Machinery gene

Sequence

Protein


Download         Length: 143 a.a.        Molecular weight: 16082.22 Da        Isoelectric Point: 5.0213

>NTDB_id=258549 DOU34_RS07525 WP_003154113.1 1477896..1478327(+) (ymcA) [Bacillus amyloliquefaciens strain SH-B74]
MTLYSKKDIVQQARNLAKMISETEEVDFFKRAEAQINENEKVSAIINQIKTLQKQAVNLKHYEKLEALKQVESKIDALQE
ELEGIPIIQEFRDSQIEVNDLLQLVAHTISNQVTNEIITSTGGNLLTGETGSKVKHSNNSCSI

Nucleotide


Download         Length: 432 bp        

>NTDB_id=258549 DOU34_RS07525 WP_003154113.1 1477896..1478327(+) (ymcA) [Bacillus amyloliquefaciens strain SH-B74]
ATGACGCTTTACTCAAAGAAAGACATTGTACAGCAGGCTAGGAACCTTGCGAAAATGATTTCTGAAACAGAAGAAGTTGA
TTTTTTCAAACGCGCCGAGGCGCAGATTAACGAAAATGAAAAAGTCTCTGCGATTATTAATCAGATTAAAACCCTGCAAA
AGCAAGCCGTTAACCTGAAGCACTACGAAAAGCTTGAAGCGCTGAAACAAGTGGAAAGTAAAATTGACGCCCTGCAGGAA
GAACTTGAAGGGATTCCGATCATTCAGGAATTCAGAGATTCCCAGATTGAGGTCAATGACCTTCTTCAGCTTGTCGCACA
TACGATCTCAAATCAGGTGACAAACGAAATCATTACATCTACCGGAGGCAACCTGCTGACGGGAGAAACCGGTTCAAAAG
TAAAACATTCGAATAACAGCTGTTCTATTTAA

Domains

Predicted by InterProScan.

Control of competence regulator ComK, YlbF/YmcA (Com_YlbF)

(9-113)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A7Z4X3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ymcA Bacillus subtilis subsp. subtilis str. 168

91.608

100

0.916