Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   CW734_RS09270 Genome accession   NZ_CP025135
Coordinates   1593335..1595032 (+) Length   565 a.a.
NCBI ID   WP_101190261.1    Uniprot ID   -
Organism   Planococcus sp. MB-3u-03     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1588335..1600032
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CW734_RS09245 (CW734_09235) xseB 1588731..1588967 (+) 237 WP_058380874.1 exodeoxyribonuclease VII small subunit -
  CW734_RS09250 (CW734_09240) - 1588964..1589842 (+) 879 WP_101190258.1 polyprenyl synthetase family protein -
  CW734_RS09255 (CW734_09245) dxs 1589937..1591847 (+) 1911 WP_101190259.1 1-deoxy-D-xylulose-5-phosphate synthase -
  CW734_RS09260 (CW734_09250) - 1591844..1592689 (+) 846 WP_101190260.1 TlyA family RNA methyltransferase -
  CW734_RS09265 (CW734_09255) argR 1592867..1593316 (+) 450 WP_058380870.1 transcriptional regulator ArgR -
  CW734_RS09270 (CW734_09260) recN 1593335..1595032 (+) 1698 WP_101190261.1 DNA repair protein RecN Machinery gene
  CW734_RS09275 (CW734_09265) spo0A 1595066..1595824 (+) 759 Protein_1570 sporulation transcription factor Spo0A -
  CW734_RS09280 (CW734_09270) - 1596028..1596759 (+) 732 WP_101190262.1 glycerophosphodiester phosphodiesterase family protein -
  CW734_RS09285 (CW734_09275) - 1596828..1597064 (-) 237 WP_101190263.1 DUF2627 domain-containing protein -
  CW734_RS09290 (CW734_09280) - 1597192..1599232 (+) 2041 Protein_1573 sigma-54-dependent Fis family transcriptional regulator -

Sequence

Protein


Download         Length: 565 a.a.        Molecular weight: 63681.76 Da        Isoelectric Point: 5.8417

>NTDB_id=258537 CW734_RS09270 WP_101190261.1 1593335..1595032(+) (recN) [Planococcus sp. MB-3u-03]
MLRELDIRNFAIIDTLSVSFTEGMTVLTGETGAGKSIIIDAVHLLAGGRGSQEFIRHGAQKAEIEGLFHIESEKHPVHKK
LEDFGIQASDGDVLLRRELNGKGKNVCRINGKLVTISILREVGAALIDIHGQHETQELMDEKQHLHLLDQFAGKLLTKAK
EGYSHTFEKYTKLKREFASYNENEQQIAQRIDLLTFQLNEIEEAQLVPGEEETLLEDRKRLQNFTKIFESISQAHEAIQG
ESKGLDWVGNAMSELEHAAAVDEQFKEASESVTGAFYQLQDTSTEIKRILDQLEFDPERLNEIEQRLALLQSLKRKYGAS
VEDMLLYQEEQADELDKLLNRDQRLRLDQEKLKELTEDLRIEAEELTMLRKQAAAKLSKAIMEQLKELHMGKASFSVQFN
LLPKGKLDRFGQDSIAFHISTNVGEPLKPLTKVASGGELSRMMLALKTIFSKHQGITSIIFDEVDTGVSGRVAQAIAEKI
AAIARHSQVLCISHLPQVAAMADQHLFIEKKVSKDRTTTSVKELAGRKRTEEMSRMLSGAEITELTLQHADELLTLARDR
KLLMK

Nucleotide


Download         Length: 1698 bp        

>NTDB_id=258537 CW734_RS09270 WP_101190261.1 1593335..1595032(+) (recN) [Planococcus sp. MB-3u-03]
ATGCTGCGAGAATTGGATATCCGCAATTTTGCGATTATCGATACATTATCGGTCAGTTTTACAGAAGGCATGACAGTTCT
GACAGGGGAAACCGGTGCAGGGAAATCGATTATCATCGATGCCGTGCATTTACTAGCCGGAGGGCGAGGAAGCCAAGAAT
TCATTCGTCACGGGGCCCAAAAAGCAGAAATTGAAGGCTTGTTCCATATTGAAAGCGAAAAGCATCCGGTCCATAAAAAA
CTGGAGGATTTCGGGATCCAAGCAAGTGACGGGGATGTCTTATTGCGTCGCGAGTTGAATGGCAAAGGCAAAAACGTCTG
CCGCATTAACGGAAAACTTGTCACCATTTCCATTTTACGTGAAGTCGGTGCCGCATTGATCGACATCCACGGCCAGCACG
AGACGCAGGAATTGATGGATGAAAAGCAGCATCTTCATCTATTGGATCAATTTGCCGGGAAACTGTTAACCAAAGCCAAA
GAAGGCTATAGCCATACATTTGAAAAATACACGAAATTAAAGCGTGAATTTGCCAGCTATAATGAAAACGAACAGCAGAT
CGCACAGCGCATCGACTTATTGACATTCCAATTGAATGAAATCGAAGAAGCCCAGCTCGTGCCGGGAGAAGAAGAGACCT
TGCTGGAAGACCGCAAACGACTGCAGAATTTCACCAAGATCTTCGAATCGATTTCACAAGCCCATGAAGCGATTCAAGGG
GAGTCGAAGGGGCTCGATTGGGTTGGCAATGCGATGAGCGAACTTGAACACGCAGCTGCTGTCGATGAGCAATTCAAAGA
AGCGTCGGAATCGGTTACCGGGGCATTCTATCAGCTCCAGGACACATCGACGGAAATCAAGCGCATACTGGACCAGTTGG
AATTCGACCCGGAACGGCTCAATGAAATCGAACAGCGCCTTGCATTATTGCAATCTTTAAAACGGAAATACGGCGCATCG
GTCGAAGACATGCTTTTGTACCAGGAAGAGCAAGCGGACGAACTCGATAAATTGCTCAACCGCGATCAGCGCTTGCGCCT
CGATCAGGAGAAACTCAAGGAATTGACCGAGGATTTGCGCATCGAAGCGGAAGAACTGACAATGCTTAGAAAGCAAGCGG
CAGCCAAATTATCGAAGGCCATCATGGAGCAGCTAAAAGAGCTCCATATGGGCAAAGCTTCATTTTCGGTACAATTCAAC
TTGCTGCCAAAAGGCAAGTTAGACCGTTTCGGCCAGGACAGCATCGCCTTCCATATTTCGACGAATGTCGGGGAACCTTT
GAAGCCGTTGACGAAAGTAGCTTCAGGCGGCGAATTGTCGCGCATGATGCTCGCGCTGAAGACGATTTTTTCCAAGCACC
AAGGCATCACATCGATCATTTTCGATGAAGTCGACACAGGAGTCAGCGGGCGCGTGGCGCAGGCAATTGCCGAGAAAATT
GCCGCCATTGCCCGCCATTCACAAGTGCTGTGCATTTCCCATTTGCCGCAAGTCGCCGCCATGGCAGACCAGCATCTGTT
TATCGAGAAAAAAGTATCGAAAGACCGCACGACAACATCGGTGAAAGAATTGGCAGGGCGCAAGCGCACTGAAGAAATGA
GCCGCATGCTGTCAGGGGCGGAAATCACCGAATTGACCTTGCAGCATGCTGATGAATTGCTGACTTTGGCGAGGGACCGG
AAGCTGTTGATGAAATAA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-510)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

51.93

100

0.524

Multiple sequence alignment