Detailed information    

insolico Bioinformatically predicted

Overview

Name   vraR   Type   Regulator
Locus tag   DOU34_RS03390 Genome accession   NZ_CP030097
Coordinates   663834..664481 (+) Length   215 a.a.
NCBI ID   WP_047935530.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SH-B74     
Function   repress expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 658834..669481
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DOU34_RS03375 glpD 659003..660670 (+) 1668 WP_003155341.1 glycerol-3-phosphate dehydrogenase -
  DOU34_RS03380 - 660810..662552 (+) 1743 WP_061046934.1 phospho-sugar mutase -
  DOU34_RS03385 - 662698..663834 (+) 1137 WP_053104656.1 GAF domain-containing sensor histidine kinase -
  DOU34_RS03390 vraR 663834..664481 (+) 648 WP_047935530.1 response regulator transcription factor Regulator
  DOU34_RS03395 - 664478..665002 (+) 525 WP_007409280.1 NADPH-dependent FMN reductase -
  DOU34_RS03400 - 665017..665259 (-) 243 WP_003155335.1 YhdB family protein -
  DOU34_RS03405 - 665450..665773 (+) 324 WP_031378436.1 DUF3889 domain-containing protein -
  DOU34_RS03410 - 665818..667272 (-) 1455 WP_061046933.1 peptidoglycan endopeptidase -
  DOU34_RS03415 nsrR 667452..667886 (-) 435 WP_007409277.1 nitric oxide-sensing transcriptional repressor NsrR -

Sequence

Protein


Download         Length: 215 a.a.        Molecular weight: 23973.36 Da        Isoelectric Point: 5.3655

>NTDB_id=258509 DOU34_RS03390 WP_047935530.1 663834..664481(+) (vraR) [Bacillus amyloliquefaciens strain SH-B74]
MKIVIADDHHVVRKGLRYFFATQEDIEVVGEASTGAEALQQAEKTEPDIILMDLSMPDMDGIEAAKIAAERFPDISIVVL
TSYSDQEHVIPALKAGAKAYQLKDAQPDDLVKTLWEVYSGRYRLSADIVPHVLTHMVQDDQDKEKYDQLTPREKDVLQEI
AKGKSNKEIAAALFISEKTVKTHVSNLLSKLNLSDRTQAALYAVKYNVFGKAVKS

Nucleotide


Download         Length: 648 bp        

>NTDB_id=258509 DOU34_RS03390 WP_047935530.1 663834..664481(+) (vraR) [Bacillus amyloliquefaciens strain SH-B74]
ATGAAAATTGTGATTGCTGATGATCATCACGTTGTCCGCAAAGGACTGCGCTATTTCTTCGCCACTCAGGAAGACATTGA
AGTTGTCGGTGAGGCGTCCACCGGTGCTGAAGCGCTTCAGCAAGCTGAAAAGACGGAGCCGGACATCATTCTGATGGATT
TATCAATGCCTGATATGGACGGCATAGAAGCGGCAAAAATTGCGGCTGAACGATTTCCGGACATCAGTATCGTCGTTTTG
ACGAGCTATTCTGATCAGGAGCATGTCATTCCCGCCCTTAAAGCCGGCGCAAAAGCGTATCAGCTGAAAGACGCCCAGCC
CGATGATTTAGTGAAAACGCTCTGGGAAGTGTATTCCGGACGTTACCGGCTGTCGGCGGATATTGTGCCTCACGTGCTGA
CCCATATGGTTCAGGATGATCAGGATAAGGAAAAATATGATCAGCTCACCCCACGTGAAAAAGATGTTCTTCAAGAAATA
GCCAAAGGGAAAAGCAATAAGGAAATTGCGGCGGCACTGTTTATTTCAGAAAAAACAGTGAAAACCCACGTGTCCAACCT
GCTGTCAAAGCTGAATCTTTCCGATCGGACGCAGGCGGCATTGTATGCGGTAAAATATAATGTTTTTGGAAAGGCGGTAA
AATCATGA

Domains

Predicted by InterProScan.

Response regulator receiver domain (Response_reg)

(3-113)

Bacterial regulatory proteins, luxR family (GerE)

(148-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  vraR Staphylococcus aureus N315

43.81

97.674

0.428
  degU Bacillus subtilis subsp. subtilis str. 168

38.356

100

0.391