Detailed information NTG0258410

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: DK877_RS10960
• Genome accession: NZ_CP030023
• Coordinates: 2207033..2208127 (+)
• Length: 364 a.a.
• NCBI ID: WP_002936177.1
• Uniprot ID: -
• Organism: Streptococcus suis strain ISU2414
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2202033..2213127

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
DK877_RS10930 (DK877_11280)	-	2202119..2202865 (-)	747	WP_013730689.1	Bro-N domain-containing protein	-
DK877_RS10935 (DK877_11285)	-	2202884..2203111 (-)	228	WP_013730690.1	helix-turn-helix domain-containing protein	-
DK877_RS10940 (DK877_11290)	-	2203265..2203978 (+)	714	WP_013730691.1	helix-turn-helix domain-containing protein	-
DK877_RS10945 (DK877_11295)	-	2204342..2205172 (+)	831	WP_013730692.1	KilA-N domain-containing protein	-
DK877_RS10950 (DK877_11300)	-	2205337..2206509 (+)	1173	WP_013730693.1	site-specific integrase	-
DK877_RS10955 (DK877_11305)	yaaA	2206647..2207030 (+)	384	WP_002936175.1	S4 domain-containing protein YaaA	-
DK877_RS10960 (DK877_11310)	recF	2207033..2208127 (+)	1095	WP_002936177.1	DNA replication/repair protein RecF	Machinery gene
DK877_RS10965 (DK877_11315)	-	2208567..2209769 (-)	1203	WP_009909264.1	IS110-like element ISSsu7 family transposase	-
DK877_RS10970 (DK877_11320)	guaB	2210020..2211501 (-)	1482	WP_014637236.1	IMP dehydrogenase	-
DK877_RS10975 (DK877_11325)	trpS	2211733..2212758 (-)	1026	WP_013730696.1	tryptophan--tRNA ligase	-

Sequence

Protein

• Length: 364 a.a.
• Molecular weight: 42217.34 Da
• Isoelectric Point: 7.2235

>NTDB_id=258410 DK877_RS10960 WP_002936177.1 2207033..2208127(+) (recF) [Streptococcus suis strain ISU2414]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIKLTDDVNLIDKFLT
ELERCRKRDLFKKNTGVGPHRDDVAFFINGMNAHYGSQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide

• Length: 1095 bp

>NTDB_id=258410 DK877_RS10960 WP_002936177.1 2207033..2208127(+) (recF) [Streptococcus suis strain ISU2414]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGGCGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA
TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAGCCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCCGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCGAATACCAAACCTCAATCAAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG
GAATTGGAAAGGTGTCGCAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGGTAGCCAAGGTCAGCACCGCAGTCTCGTTCTGTCACTCAAACTGGCTGAAATTG
AGCTGATGAAGGAGGTCACACGAGAATACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTAGATAATAATCGTCAA
ATCAAACTACTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	70.083	99.176	0.695
recF	Bacillus subtilis subsp. subtilis str. 168	43.514	100	0.442