Detailed information    

insolico Bioinformatically predicted

Overview

Name   prx   Type   Regulator
Locus tag   DK875_RS07000 Genome accession   NZ_CP030020
Coordinates   1438642..1438857 (-) Length   71 a.a.
NCBI ID   WP_024395066.1    Uniprot ID   -
Organism   Streptococcus suis strain ISU2514     
Function   Inhibit ComR activation (predicted from homology)   
Competence regulation

Genomic Context

Location: 1433642..1443857
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK875_RS06965 (DK875_07265) - 1433674..1433916 (-) 243 WP_012027466.1 type B 50S ribosomal protein L31 -
  DK875_RS06970 (DK875_07270) - 1434035..1435063 (-) 1029 WP_013730454.1 FAD:protein FMN transferase -
  DK875_RS06975 (DK875_07275) - 1435050..1435994 (-) 945 WP_013730455.1 bifunctional oligoribonuclease/PAP phosphatase NrnA -
  DK875_RS06980 (DK875_07280) - 1436089..1436550 (+) 462 WP_012775265.1 flavodoxin -
  DK875_RS06985 (DK875_07285) rpsN 1436690..1436959 (+) 270 WP_002940393.1 30S ribosomal protein S14 -
  DK875_RS06990 (DK875_07290) - 1437041..1437319 (+) 279 WP_013730456.1 chorismate mutase -
  DK875_RS06995 (DK875_07295) - 1437309..1438523 (+) 1215 WP_024390438.1 chloride channel protein -
  DK875_RS07000 (DK875_07300) prx 1438642..1438857 (-) 216 WP_024395066.1 hypothetical protein Regulator
  DK875_RS07005 (DK875_07305) - 1439032..1439781 (-) 750 WP_053866423.1 BRO family protein -
  DK875_RS07010 (DK875_07310) - 1439783..1440013 (-) 231 WP_024395064.1 hypothetical protein -
  DK875_RS07015 (DK875_07315) - 1440137..1440316 (-) 180 WP_024395063.1 hypothetical protein -
  DK875_RS07020 (DK875_07320) - 1440519..1440680 (-) 162 WP_099779929.1 CopG family transcriptional regulator -
  DK875_RS07025 (DK875_07325) - 1440876..1441595 (-) 720 WP_024395062.1 CHAP domain-containing protein -
  DK875_RS07030 (DK875_07330) - 1441579..1441929 (-) 351 WP_002937841.1 phage holin -
  DK875_RS07035 (DK875_07335) - 1441932..1442231 (-) 300 WP_014636661.1 hypothetical protein -
  DK875_RS07040 (DK875_07340) - 1442235..1442579 (-) 345 WP_002937844.1 hypothetical protein -
  DK875_RS07045 (DK875_07345) - 1442582..1442800 (-) 219 WP_002937846.1 hypothetical protein -

Sequence

Protein


Download         Length: 71 a.a.        Molecular weight: 8355.57 Da        Isoelectric Point: 4.8537

>NTDB_id=258174 DK875_RS07000 WP_024395066.1 1438642..1438857(-) (prx) [Streptococcus suis strain ISU2514]
MLEYEELKQAVDDGYITGDTVNIVRRDGKIFDYVLPGEEVRPWEVVREEKVVDVMRELKSSPQIRPKSFKK

Nucleotide


Download         Length: 216 bp        

>NTDB_id=258174 DK875_RS07000 WP_024395066.1 1438642..1438857(-) (prx) [Streptococcus suis strain ISU2514]
ATGTTAGAATACGAAGAATTAAAACAAGCAGTAGATGACGGATATATTACAGGCGATACAGTAAATATCGTACGTCGTGA
CGGCAAGATATTTGATTATGTTTTGCCAGGCGAAGAGGTCAGACCATGGGAAGTAGTGAGAGAAGAGAAAGTAGTGGATG
TGATGAGGGAATTGAAGTCGTCGCCCCAAATCCGCCCCAAAAGTTTTAAAAAATGA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  prx Streptococcus pyogenes MGAS315

68.966

81.69

0.563
  prx Streptococcus pyogenes MGAS315

65.517

81.69

0.535
  prx Streptococcus pyogenes MGAS8232

65.517

81.69

0.535
  prx Streptococcus pyogenes MGAS315

60.345

81.69

0.493
  prx Streptococcus pyogenes MGAS315

73.81

59.155

0.437
  prx Streptococcus pyogenes MGAS315

73.171

57.746

0.423
  prx Streptococcus pyogenes MGAS315

68.293

57.746

0.394

Multiple sequence alignment