Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DK875_RS02875 Genome accession   NZ_CP030020
Coordinates   581892..582488 (+) Length   198 a.a.
NCBI ID   WP_002935848.1    Uniprot ID   A0ABV2ES67
Organism   Streptococcus suis strain ISU2514     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 576892..587488
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK875_RS02860 (DK875_02995) - 577820..579022 (-) 1203 WP_280635075.1 IS110-like element ISSsu7 family transposase -
  DK875_RS02865 (DK875_03000) - 579261..579716 (+) 456 WP_002935846.1 ATP-binding cassette domain-containing protein -
  DK875_RS02870 (DK875_03005) pbp2b 579808..581883 (+) 2076 WP_002935847.1 penicillin-binding protein PBP2B -
  DK875_RS02875 (DK875_03010) recR 581892..582488 (+) 597 WP_002935848.1 recombination mediator RecR Machinery gene
  DK875_RS02880 (DK875_03015) - 582593..583639 (+) 1047 WP_002935850.1 D-alanine--D-alanine ligase -
  DK875_RS02885 (DK875_03020) - 583727..584107 (+) 381 WP_013730250.1 OsmC family protein -
  DK875_RS02890 (DK875_03025) - 584109..585185 (+) 1077 WP_002935854.1 ABC transporter permease -
  DK875_RS02895 (DK875_03030) - 585195..585863 (+) 669 WP_002935856.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21693.80 Da        Isoelectric Point: 4.4757

>NTDB_id=258146 DK875_RS02875 WP_002935848.1 581892..582488(+) (recR) [Streptococcus suis strain ISU2514]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFAKNLLAAKRDLSYCSICGNLTDQDPCAICQDSTRDQS
TILIVEDSRDVTALENIQEYHGLYHVLHGLISPMNGIGPDDINLKTLLTRLMDNEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=258146 DK875_RS02875 WP_002935848.1 581892..582488(+) (recR) [Streptococcus suis strain ISU2514]
ATGCTTTACCCTACACCTATTGCCAAGTTAATTGATAGCTATTCTAAATTGCCAGGTATCGGTATAAAAACGGCTACCCG
TTTAGCTTTTTATACTATTGGCATGGAGGATGATGTCGTTAATGAGTTTGCAAAAAATTTATTGGCAGCCAAGCGAGACC
TATCTTATTGCTCTATTTGTGGTAATTTGACAGATCAGGACCCCTGTGCTATTTGCCAGGACTCAACGCGAGACCAATCT
ACTATTTTGATTGTAGAGGATAGTCGAGATGTTACAGCCTTGGAAAATATTCAAGAATACCACGGTCTTTATCATGTCTT
GCATGGCTTGATTTCTCCCATGAATGGTATTGGACCAGATGATATTAATTTGAAAACCCTCCTCACTCGCCTGATGGACA
ATGAGGTTACAGAAGTTATTGTGGCGACCAATGCAACAGCAGATGGAGAAGCTACATCTATGTATATCTCACGTGTCCTC
AAACCTGCGGGAATCAAAGTAACCCGACTAGCTCGTGGCTTAGCGGTAGGCAGTGATATTGAATATGCAGATGAAGTGAC
CCTGTTGAGGGCTATTGAAAACCGCACAGAGCTATAG

Domains

Predicted by InterProScan.

RecR protein (RecR_ZnF)

(40-78)

Toprim domain (Toprim_4)

(80-171)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.879

100

0.879
  recR Bacillus subtilis subsp. subtilis str. 168

64.141

100

0.641
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.744

98.485

0.49