Detailed information    

insolico Bioinformatically predicted

Overview

Name   ruvA   Type   Machinery gene
Locus tag   DK875_RS00305 Genome accession   NZ_CP030020
Coordinates   59101..59691 (+) Length   196 a.a.
NCBI ID   WP_004194470.1    Uniprot ID   -
Organism   Streptococcus suis strain ISU2514     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 54101..64691
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK875_RS00295 (DK875_00300) - 55634..56923 (-) 1290 WP_002935134.1 IS4-like element ISSsu2 family transposase -
  DK875_RS00300 (DK875_00305) hexB 57125..59062 (+) 1938 WP_004194473.1 DNA mismatch repair endonuclease MutL Machinery gene
  DK875_RS00305 (DK875_00310) ruvA 59101..59691 (+) 591 WP_004194470.1 Holliday junction branch migration protein RuvA Machinery gene
  DK875_RS00310 (DK875_00315) - 59945..60514 (+) 570 WP_004194469.1 DNA-3-methyladenine glycosylase I -
  DK875_RS00315 (DK875_00320) cinA 60551..61732 (+) 1182 WP_004194467.1 competence/damage-inducible protein A Machinery gene
  DK875_RS00320 (DK875_00325) recA 61784..62935 (+) 1152 WP_011922545.1 recombinase RecA Machinery gene
  DK875_RS00325 (DK875_00330) spx 63171..63569 (+) 399 WP_002939362.1 transcriptional regulator Spx -
  DK875_RS00330 (DK875_00335) - 63669..63935 (+) 267 WP_002939360.1 IreB family regulatory phosphoprotein -
  DK875_RS00335 (DK875_00340) ruvX 63935..64354 (+) 420 WP_002939356.1 Holliday junction resolvase RuvX -
  DK875_RS00340 (DK875_00345) - 64366..64686 (+) 321 WP_002939343.1 DUF1292 domain-containing protein -

Sequence

Protein


Download         Length: 196 a.a.        Molecular weight: 21725.08 Da        Isoelectric Point: 5.0727

>NTDB_id=258120 DK875_RS00305 WP_004194470.1 59101..59691(+) (ruvA) [Streptococcus suis strain ISU2514]
MYDYIKGILTKITAKYIVVETQGVGYILQVANPYAYSGQVQQEVTVYTHQVIREDAHLLYGFATENEKSVFLSLISVSGI
GPTTALAIIAVDDNDGLVRAIEQKNITYLTKFPKIGKKTAQQMILDLEGKFVMSEEAGPVQQVAPSSENIALDEAMEAME
ALGYRPAELKKIKKFFEGTNDTAENYIKSALKMLMK

Nucleotide


Download         Length: 591 bp        

>NTDB_id=258120 DK875_RS00305 WP_004194470.1 59101..59691(+) (ruvA) [Streptococcus suis strain ISU2514]
ATGTACGACTATATTAAAGGAATTTTAACAAAAATAACTGCAAAATATATTGTGGTAGAAACACAAGGAGTAGGCTATAT
CTTGCAGGTTGCTAATCCCTACGCATACTCTGGACAAGTCCAGCAAGAAGTGACGGTCTATACTCATCAAGTGATTCGAG
AAGATGCTCATTTGCTCTACGGATTTGCTACAGAAAATGAAAAATCCGTCTTTCTGAGTCTGATTTCAGTATCAGGTATT
GGTCCAACAACGGCTCTGGCTATTATTGCTGTTGATGATAATGATGGACTTGTTCGTGCTATTGAGCAGAAAAACATTAC
CTACCTGACCAAGTTTCCGAAGATTGGCAAGAAAACAGCCCAGCAGATGATTTTGGACCTGGAAGGCAAGTTTGTCATGA
GCGAAGAAGCGGGTCCTGTTCAACAAGTAGCACCATCCAGTGAAAATATCGCTCTTGATGAAGCTATGGAAGCCATGGAA
GCCCTTGGTTACCGCCCAGCCGAACTCAAGAAAATCAAGAAATTCTTTGAAGGCACCAATGACACCGCTGAAAACTACAT
CAAGTCAGCCCTTAAAATGCTGATGAAGTAA

Domains

Predicted by InterProScan.

RuvA N terminal domain (RuvA_N)

(1-61)

Helix-hairpin-helix domain (HHH_5)

(71-127)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  ruvA Streptococcus pneumoniae R6

75.635

100

0.76
  ruvA Streptococcus pneumoniae D39

75.635

100

0.76
  ruvA Streptococcus pneumoniae TIGR4

75.635

100

0.76
  ruvA Bacillus subtilis subsp. subtilis str. 168

38.916

100

0.403

Multiple sequence alignment