Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   DK235_RS06240 Genome accession   NZ_CP030017
Coordinates   1273130..1273726 (-) Length   198 a.a.
NCBI ID   WP_012027296.1    Uniprot ID   A0A0H3N2W4
Organism   Streptococcus suis strain ISU1606     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1268130..1278726
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  DK235_RS06220 (DK235_06460) - 1269232..1269930 (-) 699 WP_012775213.1 TIGR02206 family membrane protein -
  DK235_RS06225 (DK235_06465) murF 1270021..1271382 (-) 1362 WP_012775214.1 UDP-N-acetylmuramoyl-tripeptide--D-alanyl-D- alanine ligase -
  DK235_RS06230 (DK235_06470) - 1271511..1271891 (-) 381 WP_012775215.1 OsmC family protein -
  DK235_RS06235 (DK235_06475) - 1271979..1273025 (-) 1047 WP_012775216.1 D-alanine--D-alanine ligase -
  DK235_RS06240 (DK235_06480) recR 1273130..1273726 (-) 597 WP_012027296.1 recombination mediator RecR Machinery gene
  DK235_RS06245 (DK235_06485) pbp2b 1273735..1275810 (-) 2076 WP_012775443.1 penicillin-binding protein PBP2B -
  DK235_RS06250 (DK235_06490) - 1275887..1276636 (-) 750 WP_012027298.1 ATP-binding cassette domain-containing protein -
  DK235_RS06255 (DK235_06495) - 1276799..1277341 (-) 543 WP_012027299.1 ATP-binding cassette domain-containing protein -
  DK235_RS06260 (DK235_06500) vicX 1277860..1278663 (-) 804 WP_012027300.1 MBL fold metallo-hydrolase Regulator

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21707.83 Da        Isoelectric Point: 4.4829

>NTDB_id=258084 DK235_RS06240 WP_012027296.1 1273130..1273726(-) (recR) [Streptococcus suis strain ISU1606]
MLYPTPIAKLIDSYSKLPGIGIKTATRLAFYTIGMEDDVVNEFAKNLLAAKRDLSYCSICGNLTDQDPCAICQDSTRDQS
TILIVEDSRDVTALENIQEYHGLYHVLHGLISPMNGIGPDDINLKTLLTRLMENEVTEVIVATNATADGEATSMYISRVL
KPAGIKVTRLARGLAVGSDIEYADEVTLLRAIENRTEL

Nucleotide


Download         Length: 597 bp        

>NTDB_id=258084 DK235_RS06240 WP_012027296.1 1273130..1273726(-) (recR) [Streptococcus suis strain ISU1606]
ATGCTTTACCCTACACCTATTGCCAAGTTAATTGATAGCTATTCTAAATTGCCAGGTATCGGTATAAAAACGGCTACCCG
TTTAGCTTTTTATACTATTGGCATGGAGGATGATGTCGTTAATGAGTTTGCAAAAAATTTATTGGCAGCCAAGCGAGACC
TATCTTATTGCTCCATTTGTGGTAATTTGACAGATCAGGACCCCTGTGCCATTTGCCAGGACTCAACGCGAGACCAGTCT
ACTATTTTGATTGTAGAGGATAGTCGAGATGTTACAGCCTTGGAAAATATCCAAGAGTATCACGGTCTCTACCATGTATT
GCATGGCTTGATTTCCCCTATGAACGGGATTGGGCCAGACGATATTAACCTGAAAACTCTGCTGACCCGCTTGATGGAAA
ATGAGGTGACAGAGGTGATTGTGGCGACTAATGCAACAGCAGATGGAGAGGCTACATCCATGTATATCTCACGTGTCCTT
AAACCTGCTGGAATCAAAGTAACTAGACTAGCTCGTGGCTTAGCGGTAGGCAGTGATATTGAATATGCAGATGAAGTGAC
CCTGTTGAGGGCTATTGAAAACCGCACAGAGCTATAG

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(80-171)

RecR protein (RecR_ZnF)

(40-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0H3N2W4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Streptococcus pneumoniae R6

87.374

100

0.874
  recR Bacillus subtilis subsp. subtilis str. 168

63.636

100

0.636
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

49.744

98.485

0.49

Multiple sequence alignment