Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiD   Type   Regulator
Locus tag   CWI64_RS04810 Genome accession   NZ_CP025076
Coordinates   908102..909028 (-) Length   308 a.a.
NCBI ID   WP_000103700.1    Uniprot ID   -
Organism   Streptococcus pneumoniae strain BHN97x     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 903102..914028
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWI64_RS04790 (CWI64_04790) - 903756..904649 (-) 894 WP_001012090.1 ABC transporter permease -
  CWI64_RS04795 (CWI64_04795) - 904661..905598 (-) 938 Protein_909 ABC transporter substrate-binding protein -
  CWI64_RS04800 (CWI64_04800) amiF 906089..907015 (-) 927 WP_001291293.1 ATP-binding cassette domain-containing protein Regulator
  CWI64_RS04805 (CWI64_04805) amiE 907026..908093 (-) 1068 WP_000159556.1 ABC transporter ATP-binding protein Regulator
  CWI64_RS04810 (CWI64_04810) amiD 908102..909028 (-) 927 WP_000103700.1 oligopeptide ABC transporter permease OppC Regulator
  CWI64_RS04815 (CWI64_04815) amiC 909028..910524 (-) 1497 WP_000759905.1 ABC transporter permease Regulator
  CWI64_RS04820 (CWI64_04820) amiA3 910591..912570 (-) 1980 WP_000742234.1 peptide ABC transporter substrate-binding protein Regulator

Sequence

Protein


Download         Length: 308 a.a.        Molecular weight: 34634.76 Da        Isoelectric Point: 9.7939

>NTDB_id=258076 CWI64_RS04810 WP_000103700.1 908102..909028(-) (amiD) [Streptococcus pneumoniae strain BHN97x]
MSTIDKEKFQFVKRDDFASETIDAPAYSYWKSVFKQFMKKKSTVVMLGILVAIILISFIYPMFSKFDFNDVSKVNDFSVR
YIKPNAEHWFGTDSNGKSLFDGVWFGARNSILISVIATVINLVIGVFVGGIWGISKSVDRVMMEVYNVISNIPPLLIVIV
LTYSIGAGFWNLIFAMSVTTWIGIAFMIRVQILRYRDLEYNLASRTLGTPTLKIVAKNIMPQLVSVIVTTMTQMLPSFIS
YEAFLSFFGLGLPITVPSLGRLISDYSQNVTTNAYLFWIPLTTLVLVSLSLFVVGQNLADASDPRTHR

Nucleotide


Download         Length: 927 bp        

>NTDB_id=258076 CWI64_RS04810 WP_000103700.1 908102..909028(-) (amiD) [Streptococcus pneumoniae strain BHN97x]
ATGTCTACAATCGATAAAGAAAAATTTCAGTTTGTAAAACGTGACGATTTTGCCTCTGAAACTATTGATGCGCCAGCATA
TTCTTACTGGAAATCAGTGTTTAAACAATTTATGAAGAAAAAATCAACTGTAGTCATGTTGGGAATCTTGGTAGCCATCA
TTTTGATAAGTTTCATCTACCCAATGTTTTCTAAGTTTGATTTCAATGATGTCAGCAAGGTAAACGACTTTAGTGTTCGT
TATATCAAGCCAAATGCGGAGCATTGGTTCGGTACTGACAGTAACGGTAAATCGCTCTTTGACGGTGTCTGGTTCGGAGC
TCGTAACTCCATCCTCATTTCTGTGATTGCGACAGTGATTAACTTGGTTATCGGTGTTTTTGTCGGTGGTATTTGGGGTA
TTTCAAAATCAGTTGACCGTGTCATGATGGAAGTTTACAACGTCATCTCAAACATCCCACCTCTTTTGATTGTTATTGTC
TTGACTTACTCAATCGGAGCTGGATTCTGGAATCTGATTTTTGCCATGAGCGTAACAACATGGATTGGTATTGCCTTCAT
GATCCGTGTGCAAATCTTGCGCTATCGTGACTTGGAATACAACTTGGCGTCACGTACTTTGGGAACACCAACCTTGAAGA
TTGTTGCCAAAAATATCATGCCTCAATTGGTATCTGTTATTGTGACAACCATGACTCAAATGCTTCCAAGCTTTATCTCA
TACGAAGCCTTCTTGTCTTTCTTCGGTCTTGGATTACCGATTACAGTGCCAAGTTTGGGTCGTTTGATTTCGGATTATTC
ACAAAACGTAACAACCAATGCTTACTTGTTCTGGATTCCATTGACAACCCTTGTCTTGGTATCCTTGTCCCTTTTCGTAG
TTGGTCAAAACTTAGCGGATGCTAGTGATCCACGTACACATAGATAG

Domains

Predicted by InterproScan.

N-terminal TM domain of oligopeptide transport permease C (OppC_N)

(28-71)

Binding-protein-dependent transport system inner membrane component (BPD_transp_1)

(124-306)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiD Streptococcus salivarius strain HSISS4

83.117

100

0.831
  amiD Streptococcus thermophilus LMG 18311

81.169

100

0.812
  amiD Streptococcus thermophilus LMD-9

81.169

100

0.812

Multiple sequence alignment