Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   CWI35_RS16510 Genome accession   NZ_CP025074
Coordinates   3174676..3175494 (+) Length   272 a.a.
NCBI ID   WP_205536319.1    Uniprot ID   -
Organism   [Bacillus] caldolyticus strain NEB414     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3169676..3180494
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWI35_RS16495 (CWI35_16465) argR 3170425..3170874 (+) 450 WP_011231872.1 transcriptional regulator ArgR -
  CWI35_RS16500 (CWI35_16470) recN 3171001..3172722 (+) 1722 WP_033025834.1 DNA repair protein RecN Machinery gene
  CWI35_RS16505 (CWI35_16475) spoIVB 3172996..3174291 (+) 1296 WP_011231870.1 SpoIVB peptidase -
  CWI35_RS16510 (CWI35_16480) spo0A 3174676..3175494 (+) 819 WP_205536319.1 sporulation transcription factor Spo0A Regulator
  CWI35_RS16515 (CWI35_16485) - 3175646..3175798 (-) 153 WP_011231868.1 YycC family protein -
  CWI35_RS16520 (CWI35_16490) - 3175908..3176636 (+) 729 WP_011231867.1 glycerophosphodiester phosphodiesterase -
  CWI35_RS16525 (CWI35_16495) - 3176712..3176960 (-) 249 WP_011231866.1 DUF2627 domain-containing protein -
  CWI35_RS16530 (CWI35_16500) - 3177100..3179163 (+) 2064 WP_042381003.1 sigma-54-dependent Fis family transcriptional regulator -
  CWI35_RS16535 (CWI35_16505) yqiS 3179304..3180203 (+) 900 WP_011231864.1 phosphate butyryltransferase -

Sequence

Protein


Download         Length: 272 a.a.        Molecular weight: 30519.44 Da        Isoelectric Point: 7.5860

>NTDB_id=258052 CWI35_RS16510 WP_205536319.1 3174676..3175494(+) (spo0A) [[Bacillus] caldolyticus strain NEB414]
MLHSKKKWGRTIVLSIKVCIADDNRELVTLLDEYISSQPDMEVIGTAYNGQDCLHMLEEKRPDILLLDIIMPHLDGLAVL
EKVRAGCEHQPSVIMLTAFGQEDVTKKAVELGASYFILKPFDMENLVHHIWQIHGKTAPMVRKTGSAYQARDNKPKNLDA
SITSIIHEIGVPAHIKGYLYLREAIAMVYHDIELLGSITKVLYPDIAKKYNTTASRVERAIRHAIEVAWSRGNLESISSL
FGYTVSVSKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 819 bp        

>NTDB_id=258052 CWI35_RS16510 WP_205536319.1 3174676..3175494(+) (spo0A) [[Bacillus] caldolyticus strain NEB414]
ATGTTACATAGCAAGAAAAAGTGGGGGAGGACGATCGTTTTGAGCATTAAGGTGTGCATTGCCGATGATAACCGCGAATT
GGTGACATTGCTTGACGAATATATCTCGAGTCAGCCGGACATGGAAGTGATTGGCACGGCGTATAACGGCCAAGATTGCC
TTCATATGCTCGAGGAAAAGCGGCCGGATATTTTGCTTCTGGACATCATTATGCCGCACTTGGATGGGTTGGCTGTGCTT
GAGAAAGTCCGCGCAGGTTGTGAGCATCAGCCGAGCGTCATTATGCTGACGGCGTTCGGCCAGGAGGATGTCACGAAAAA
GGCAGTGGAACTCGGCGCTTCCTACTTCATTTTAAAACCGTTCGACATGGAGAATTTGGTCCATCACATTTGGCAGATTC
ATGGCAAAACGGCGCCGATGGTCAGAAAAACCGGCTCTGCCTACCAGGCGCGCGACAACAAACCGAAAAATTTGGATGCG
AGCATTACGAGCATCATCCATGAAATCGGCGTCCCGGCGCATATTAAAGGCTATCTGTACTTGCGCGAAGCGATCGCGAT
GGTGTACCACGACATCGAACTGCTCGGCTCCATCACGAAAGTGCTCTATCCGGACATCGCGAAAAAATACAACACGACGG
CCAGCCGCGTCGAGCGCGCCATTCGCCATGCGATCGAAGTCGCTTGGAGCCGCGGCAACCTCGAATCGATTTCCTCGCTG
TTCGGCTATACGGTGAGCGTCTCGAAGGCAAAGCCGACAAACTCGGAATTCATCGCCATGGTGGCCGATAAGCTCCGGCT
TGAGCATAAAGCATCGTAA

Domains

Predicted by InterproScan.

Response regulator receiver domain (Response_reg)

(18-130)

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(162-265)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

77.652

97.059

0.754

Multiple sequence alignment