Detailed information    

insolico Bioinformatically predicted

Overview

Name   recN   Type   Machinery gene
Locus tag   CWI35_RS16500 Genome accession   NZ_CP025074
Coordinates   3171001..3172722 (+) Length   573 a.a.
NCBI ID   WP_033025834.1    Uniprot ID   -
Organism   [Bacillus] caldolyticus strain NEB414     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3166001..3177722
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWI35_RS16475 (CWI35_16445) - 3166249..3166479 (+) 231 WP_012820585.1 exodeoxyribonuclease VII small subunit -
  CWI35_RS16480 (CWI35_16450) - 3166483..3167376 (+) 894 WP_011231875.1 polyprenyl synthetase family protein -
  CWI35_RS16485 (CWI35_16455) dxs 3167624..3169516 (+) 1893 WP_033004878.1 1-deoxy-D-xylulose-5-phosphate synthase -
  CWI35_RS16490 (CWI35_16460) - 3169520..3170368 (+) 849 WP_011231873.1 TlyA family RNA methyltransferase -
  CWI35_RS16495 (CWI35_16465) argR 3170425..3170874 (+) 450 WP_011231872.1 transcriptional regulator ArgR -
  CWI35_RS16500 (CWI35_16470) recN 3171001..3172722 (+) 1722 WP_033025834.1 DNA repair protein RecN Machinery gene
  CWI35_RS16505 (CWI35_16475) spoIVB 3172996..3174291 (+) 1296 WP_011231870.1 SpoIVB peptidase -
  CWI35_RS16510 (CWI35_16480) spo0A 3174676..3175494 (+) 819 WP_205536319.1 sporulation transcription factor Spo0A Regulator
  CWI35_RS16515 (CWI35_16485) - 3175646..3175798 (-) 153 WP_011231868.1 YycC family protein -
  CWI35_RS16520 (CWI35_16490) - 3175908..3176636 (+) 729 WP_011231867.1 glycerophosphodiester phosphodiesterase -
  CWI35_RS16525 (CWI35_16495) - 3176712..3176960 (-) 249 WP_011231866.1 DUF2627 domain-containing protein -

Sequence

Protein


Download         Length: 573 a.a.        Molecular weight: 64268.52 Da        Isoelectric Point: 4.9253

>NTDB_id=258051 CWI35_RS16500 WP_033025834.1 3171001..3172722(+) (recN) [[Bacillus] caldolyticus strain NEB414]
MLAELSIKNFAIIESLSLSFDKGLTVLTGETGAGKSIIIDAIHLLIGGRGSAEFVRFGAEKAEIEGLFLLDDDRHPCWQK
CADVGIDASDGMIVLRRDIFANGKSVCRINGKLVTTAVLRDIGATLVDIHGQHEHQELMDPSRHLPLLDEFGGLEAAEAL
ARYRAVYERYEELGNKLKKLSENEQQMAHRLDLLTFQLREIEQAALEPGEDERLMEEKVRIVNFQKIYTALQKSYEALSG
EGRGLDSIGEAMRHLDDVAGMDAALKDAHETTANCYYLLEEVMYKLRDQIEEMEYDPERLDAIESRLAEIGQLKRKYGAT
IADILHYAETIAEEIETIENRETHVHELTQQLALVTDELLTEAKNVTAVRQTYARRLIERIHQELKDLYMDKTKFDIVFA
KREGSLDAPLVDGVPVRFQEDGIDVVEFYISTNVGEPLKPLVKVASGGELSRIMLALKTIFSKHQGVTSIVFDEVDTGVS
GRVAQAMAEKIYRIASQSQVLCISHLPQVAAMADTHLLIAKETDGERTKTVVRKLNEEEKVKEIGRMISGVEMTELTKRH
AKELLELAAKMKH

Nucleotide


Download         Length: 1722 bp        

>NTDB_id=258051 CWI35_RS16500 WP_033025834.1 3171001..3172722(+) (recN) [[Bacillus] caldolyticus strain NEB414]
ATGCTCGCCGAGCTGTCGATTAAAAATTTCGCCATTATCGAGTCGCTCTCGTTGTCGTTTGACAAAGGGCTGACGGTGTT
AACCGGCGAAACGGGAGCCGGCAAATCGATCATCATCGACGCGATTCATTTGTTGATCGGCGGACGCGGCTCCGCTGAAT
TTGTCCGCTTTGGAGCGGAAAAGGCGGAAATCGAAGGGCTGTTTTTGCTTGATGATGACCGCCATCCGTGCTGGCAAAAA
TGCGCAGACGTTGGCATCGACGCCAGCGACGGCATGATCGTGTTGCGCCGCGATATTTTCGCCAACGGCAAAAGCGTCTG
CCGCATTAACGGCAAGCTCGTCACGACGGCGGTGCTGCGCGACATCGGGGCGACGCTTGTTGATATTCACGGCCAGCATG
AACATCAAGAACTGATGGATCCGTCCCGCCATCTGCCGCTTTTAGACGAGTTCGGCGGCCTAGAGGCGGCAGAGGCGCTT
GCTCGCTACCGCGCGGTCTACGAGCGGTATGAGGAGCTCGGAAACAAATTGAAAAAGCTGAGCGAAAATGAACAGCAAAT
GGCGCACCGGCTTGATTTGCTGACGTTTCAGCTGCGTGAAATCGAGCAGGCGGCGCTCGAGCCGGGCGAGGACGAGCGGC
TGATGGAGGAAAAAGTTCGCATCGTCAATTTTCAAAAAATTTATACCGCGCTGCAGAAAAGCTATGAGGCCCTCTCCGGA
GAGGGACGCGGGCTTGATTCCATCGGGGAGGCGATGCGCCATCTCGATGACGTCGCAGGCATGGATGCAGCGCTCAAAGA
TGCGCATGAAACGACGGCGAACTGCTACTATTTGCTCGAGGAAGTCATGTACAAGCTGCGCGATCAAATTGAGGAGATGG
AATACGACCCAGAGCGGCTCGATGCCATTGAAAGCCGTCTCGCGGAAATCGGGCAGCTCAAACGAAAATACGGGGCGACG
ATCGCCGATATTTTGCACTATGCCGAGACGATCGCCGAGGAAATCGAGACAATCGAAAATCGCGAAACGCATGTGCATGA
GCTTACGCAGCAGCTCGCTCTGGTGACGGACGAGTTGCTCACGGAGGCGAAAAACGTCACCGCTGTTCGGCAAACATATG
CCCGGCGCCTGATTGAGCGCATTCATCAAGAACTGAAAGACTTGTACATGGACAAAACGAAATTTGACATCGTATTTGCC
AAGCGCGAAGGATCGCTTGACGCTCCCTTGGTCGACGGCGTGCCGGTTAGGTTCCAAGAAGATGGCATCGATGTCGTCGA
GTTTTACATTTCGACGAACGTCGGCGAGCCGTTAAAACCGCTCGTCAAAGTCGCTTCCGGCGGCGAGCTGTCGCGCATTA
TGCTGGCGTTGAAAACGATTTTTTCCAAACATCAAGGAGTGACGTCGATTGTTTTTGATGAGGTCGACACCGGTGTCAGC
GGACGCGTCGCCCAGGCAATGGCGGAAAAAATTTACCGCATCGCCAGCCAGTCGCAAGTGCTTTGCATTTCCCATCTGCC
GCAAGTCGCTGCGATGGCGGACACGCACTTGTTGATCGCCAAAGAGACGGATGGGGAACGGACGAAAACAGTCGTGAGGA
AGCTCAATGAGGAGGAGAAAGTGAAAGAAATCGGGCGGATGATTTCCGGCGTCGAGATGACGGAATTGACGAAACGGCAT
GCCAAAGAGCTGTTGGAACTGGCGGCGAAAATGAAACATTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(1-525)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recN Bacillus subtilis subsp. subtilis str. 168

61.498

100

0.616

Multiple sequence alignment