Detailed information NTG0258016

Bioinformatically predicted

Overview

• Name: recF
• Type: Machinery gene
• Locus tag: A7J09_RS12225
• Genome accession: NZ_CP030015
• Coordinates: 2548340..2549434 (+)
• Length: 364 a.a.
• NCBI ID: WP_012028050.1
• Uniprot ID: A0A0H3N2H6
• Organism: Streptococcus suis strain ISU2812
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2543340..2554434

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
A7J09_RS12195 (A7J09_12435)	-	2543836..2544462 (-)	627	WP_029178752.1	Rha family transcriptional regulator	-
A7J09_RS12200	-	2544476..2544979 (-)	504	WP_029178753.1	Rha family transcriptional regulator	-
A7J09_RS12205 (A7J09_12450)	-	2545189..2545386 (-)	198	WP_029178754.1	helix-turn-helix domain-containing protein	-
A7J09_RS12210 (A7J09_12455)	-	2545549..2546133 (+)	585	WP_002938233.1	helix-turn-helix domain-containing protein	-
A7J09_RS12215 (A7J09_12460)	-	2546644..2547816 (+)	1173	WP_053861611.1	tyrosine-type recombinase/integrase	-
A7J09_RS12220 (A7J09_12465)	yaaA	2547954..2548337 (+)	384	WP_024394583.1	S4 domain-containing protein YaaA	-
A7J09_RS12225 (A7J09_12470)	recF	2548340..2549434 (+)	1095	WP_012028050.1	DNA replication/repair protein RecF	Machinery gene
A7J09_RS12230 (A7J09_12475)	guaB	2549706..2551187 (-)	1482	WP_014637236.1	IMP dehydrogenase	-
A7J09_RS12235 (A7J09_12480)	trpS	2551419..2552444 (-)	1026	WP_013730696.1	tryptophan--tRNA ligase	-
A7J09_RS12240 (A7J09_12485)	-	2552799..2553671 (+)	873	WP_029178756.1	YitT family protein	-

Sequence

Protein

• Length: 364 a.a.
• Molecular weight: 42188.24 Da
• Isoelectric Point: 6.9173

>NTDB_id=258016 A7J09_RS12225 WP_012028050.1 2548340..2549434(+) (recF) [Streptococcus suis strain ISU2812]
MWLERLELQHFRNYNQLDIEFHKGLNVFLGENAQGKTNILESIYVLALTRSHRTRTDKDLLQFQEKELSISGLLHRTSGK
VPLDIHLTDKGRVTKVNHLKQAKLSNYIGHMNVVLFAPEDLQLIKGAPALRRKFIDVELGQIKPLYLSDLSNYNHVLKQR
NTYLKSTDKIDENFLSVLDQQLAEYGSRVIQHRIDFLKKLEEFGNRKVQEISGNREELTIEYQTSIELTDDVNLIDKFLT
ELEKSRKRDLFKKNTGVGPHRDDVAFFINGMNAHYASQGQHRSLVLSLKLAEIELMKEVTREYPILLLDDVMSELDNNRQ
IKLLETITDTIQTFITTTSLDHLHKLPDSLKIFHIESGKVTESE

Nucleotide

• Length: 1095 bp

>NTDB_id=258016 A7J09_RS12225 WP_012028050.1 2548340..2549434(+) (recF) [Streptococcus suis strain ISU2812]
ATGTGGCTAGAACGATTAGAGTTACAACATTTTCGCAATTACAACCAATTAGATATTGAGTTCCACAAAGGGCTCAATGT
CTTTTTAGGCGAAAACGCCCAAGGAAAAACCAATATTCTAGAATCTATCTATGTTTTAGCCTTAACACGAAGTCATCGAA
CACGGACAGATAAGGACCTACTACAGTTTCAAGAAAAGGAATTATCTATTTCTGGTTTACTCCATCGCACAAGCGGTAAA
GTTCCCCTTGACATTCACTTGACAGACAAGGGACGAGTGACCAAGGTCAACCATCTCAAACAAGCCAAGCTTTCCAACTA
TATCGGCCACATGAATGTTGTTCTCTTCGCCCCTGAAGATTTACAGCTGATAAAAGGTGCGCCTGCTTTGAGAAGAAAGT
TCATCGATGTCGAGCTCGGGCAAATCAAGCCACTCTATCTCTCTGACCTATCGAATTATAACCACGTTTTAAAACAAAGA
AATACTTACCTCAAATCTACAGATAAGATTGATGAGAACTTCCTATCTGTGTTAGATCAGCAACTTGCTGAATATGGTAG
TCGTGTTATCCAACATCGTATTGACTTTCTAAAGAAATTAGAGGAATTCGGAAATAGAAAAGTTCAAGAAATATCTGGCA
ATCGGGAAGAATTGACAATCGAATACCAGACCTCAATCGAATTGACAGATGATGTCAATTTAATTGACAAATTCTTGACG
GAACTAGAAAAGTCTCGTAAACGTGATTTATTTAAGAAAAATACAGGAGTTGGACCACATCGAGATGATGTAGCTTTCTT
TATAAATGGAATGAATGCCCATTATGCTAGCCAAGGTCAGCACCGCAGTCTCGTTCTGTCACTCAAACTAGCTGAAATTG
AGCTGATGAAAGAAGTCACACGAGAGTACCCAATTCTACTCTTAGATGATGTTATGAGTGAGCTGGATAATAATCGTCAA
ATCAAACTATTAGAAACTATTACAGATACGATTCAAACATTTATTACAACGACATCTTTAGACCATTTACATAAGCTACC
TGATAGTTTAAAAATCTTCCATATTGAGTCTGGTAAGGTTACTGAGTCAGAATAA

Domains

Predicted by InterProScan.

• RecF/RecN/SMC N terminal domain (SMC_N) (3-358)

3D structure

• AlphaFold DB: A0A0H3N2H6

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recF	Streptococcus pneumoniae R6	70.36	99.176	0.698
recF	Bacillus subtilis subsp. subtilis str. 168	43.514	100	0.442