Detailed information    

insolico Bioinformatically predicted

Overview


Name   hexA   Type   Machinery gene
Locus tag   A7J09_RS11910 Genome accession   NZ_CP030015
Coordinates   2482730..2485270 (-) Length   846 a.a.
NCBI ID   WP_053861554.1    Uniprot ID   -
Organism   Streptococcus suis strain ISU2812     
Function   DNA mismatch repair (predicted from homology)   
Homologous recombination

Genomic Context


Location: 2477730..2490270
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J09_RS11885 (A7J09_12120) - 2478888..2479631 (-) 744 WP_013730659.1 amino acid ABC transporter ATP-binding protein -
  A7J09_RS11890 (A7J09_12125) - 2479631..2480434 (-) 804 WP_014637221.1 amino acid ABC transporter permease -
  A7J09_RS11895 (A7J09_12130) - 2480620..2481471 (-) 852 WP_013730662.1 amino acid ABC transporter substrate-binding protein -
  A7J09_RS11900 (A7J09_12135) - 2481504..2482190 (-) 687 WP_013730663.1 gamma-glutamyl-gamma-aminobutyrate hydrolase family protein -
  A7J09_RS11905 (A7J09_12140) - 2482304..2482477 (-) 174 WP_009910995.1 hypothetical protein -
  A7J09_RS11910 (A7J09_12150) hexA 2482730..2485270 (-) 2541 WP_053861554.1 DNA mismatch repair protein MutS Machinery gene
  A7J09_RS11915 (A7J09_12155) argR 2485285..2485725 (-) 441 WP_032512697.1 arginine repressor -
  A7J09_RS11920 (A7J09_12160) argS 2485832..2487520 (+) 1689 WP_029174610.1 arginine--tRNA ligase -
  A7J09_RS11925 (A7J09_12165) - 2487700..2488614 (+) 915 WP_029752992.1 SH3 domain-containing protein -
  A7J09_RS11930 (A7J09_12170) - 2488668..2489192 (-) 525 WP_024394551.1 membrane protein -
  A7J09_RS11935 (A7J09_12175) - 2489304..2489489 (+) 186 WP_053861553.1 hypothetical protein -

Sequence


Protein


Download         Length: 846 a.a.        Molecular weight: 95093.60 Da        Isoelectric Point: 4.8806

>NTDB_id=258014 A7J09_RS11910 WP_053861554.1 2482730..2485270(-) (hexA) [Streptococcus suis strain ISU2812]
MATEKISPGMQQYLDIKANYPDAFLLFRMGDFYELFYEDAVEAAQILELSLTSRNKNAENPIPMAGVPYHAAQQYIDTLV
ELGHKVAIAEQMEDPKQAVGVVKREVVQVITPGTVTDSSKMGADSNYLVAIDRQGVQFALSYMDVSTGQFFVTSLDDFTS
LCGEIRNLRARELVIGYALSEEEEQVFSNQMNLLLSFEDEVTEDVQLIDNSLTDLEKAAAGKLLSYLHRTQMRDLSHLQK
VVHYEIKDYLQMDYATKSSLDLLENGRTGKKHGSLYWLLDETKTAMGMRLLRTWIDRPLIDLKRIENRQAVVQVFLDYFF
ERSDLVEALKGVYDIERLASRVSFGKTMPKDLLQLSQTLGNIPAIKNILQQINEPALGNLVAGLDPIPELHALISSAIDP
EAQGTITDGNIIRTGFDETLDQYRLVMREGAGWIAEIEAKEREASGINNLKIDYNKKDGYYFHVTNSNLDNVPDHFFRKA
TLKNSERYGTEELAKIEGQMLEARDKSSNLEYEIFMRIRQEVEKYISRLQKLARTIATIDVLQAFAVVAEQQHLVCPRFT
DQRELTINRGRHAVVEKVMGKQTYIPNSIHLNTDTHMQLITGPNMSGKSTYMRQLAVIVIMAQMGSYVPADQAELPIFDA
IFTRIGAADDLVSGQSTFMVEMMEANKAVRLATDQSLILFDELGRGTATYDGMALAQSIIEYIHDKIGAKTLFATHYHEL
TDLSQTLEHLENVHVSTLEKDGQVTFLHKIAQGPADKSYGIHVAKIAGMPEELLQRADRILQTLENQAPTAPAKPAPSVV
AEPSGQIDLFADTPSHPVLKELEKLDIYNMTPMEVMMAVAELKKKI

Nucleotide


Download         Length: 2541 bp        

>NTDB_id=258014 A7J09_RS11910 WP_053861554.1 2482730..2485270(-) (hexA) [Streptococcus suis strain ISU2812]
ATGGCAACAGAAAAAATTTCTCCGGGAATGCAGCAGTATCTGGATATAAAAGCAAACTATCCAGATGCTTTTTTGCTTTT
CCGTATGGGAGACTTTTATGAATTATTTTATGAAGATGCGGTAGAAGCGGCACAGATTTTGGAATTGTCCTTGACCAGTC
GTAATAAGAATGCGGAAAATCCGATTCCTATGGCGGGGGTACCGTATCACGCGGCACAACAGTATATCGACACACTTGTT
GAACTGGGGCATAAGGTCGCTATAGCTGAGCAGATGGAAGATCCTAAGCAGGCAGTCGGCGTGGTCAAGCGGGAAGTGGT
GCAGGTCATCACGCCTGGTACGGTAACAGACTCGTCCAAAATGGGAGCAGACAGTAACTATTTGGTTGCGATTGACCGTC
AGGGAGTGCAGTTCGCACTTTCTTATATGGATGTGTCAACAGGTCAGTTTTTTGTGACTAGTTTGGATGATTTTACTAGT
CTTTGCGGTGAAATCCGCAATTTACGAGCACGTGAATTGGTCATCGGCTATGCTTTATCTGAGGAAGAAGAGCAGGTCTT
TTCTAATCAGATGAACCTCCTGCTCTCTTTTGAGGATGAGGTGACGGAAGACGTCCAGCTGATTGACAATTCGCTGACAG
ACTTGGAAAAGGCTGCGGCAGGTAAACTCCTCAGCTACCTACATCGGACTCAGATGCGAGATCTGAGCCACTTGCAAAAG
GTGGTCCATTATGAAATCAAGGACTATCTGCAAATGGACTATGCAACCAAGTCCAGTCTGGATCTGCTTGAAAACGGTCG
GACAGGCAAGAAGCATGGTAGTTTGTACTGGTTGTTAGACGAAACCAAGACAGCCATGGGTATGCGACTATTGCGGACAT
GGATTGATCGTCCATTGATTGACCTTAAGCGGATTGAGAATCGTCAGGCTGTCGTACAGGTCTTTCTGGATTACTTCTTT
GAACGGAGTGACTTGGTCGAGGCTTTAAAAGGTGTCTATGACATCGAACGTTTGGCCAGCCGAGTGTCTTTTGGAAAAAC
CATGCCCAAGGATCTCTTGCAGCTCTCCCAGACTTTGGGAAATATCCCAGCAATCAAGAATATCTTGCAACAAATCAATG
AGCCTGCTCTAGGCAATCTGGTAGCTGGATTGGACCCAATCCCAGAACTGCATGCTCTGATCAGCTCTGCTATTGACCCA
GAAGCCCAAGGGACTATCACAGATGGGAACATCATCCGTACAGGCTTTGACGAAACGCTGGATCAGTATCGTCTGGTCAT
GCGTGAGGGAGCGGGTTGGATTGCGGAGATTGAGGCCAAGGAGCGTGAAGCGTCCGGTATCAACAATCTTAAGATTGATT
ACAATAAAAAAGACGGTTACTATTTCCATGTGACCAATTCCAATTTGGACAATGTGCCGGACCATTTTTTCCGTAAGGCG
ACCTTGAAAAATTCGGAGCGCTATGGAACGGAAGAGTTGGCTAAGATCGAAGGGCAGATGTTGGAGGCGCGCGACAAGTC
GTCTAACTTGGAGTACGAGATTTTCATGCGGATTCGTCAAGAGGTTGAAAAATATATCAGTCGCTTGCAGAAGTTGGCTC
GGACCATTGCGACCATCGATGTTTTGCAGGCTTTTGCAGTTGTGGCAGAGCAGCAACATTTGGTTTGTCCACGCTTCACA
GATCAAAGAGAACTGACCATTAACCGTGGTCGTCATGCGGTGGTGGAGAAGGTCATGGGCAAGCAGACCTACATTCCCAA
CTCTATTCACTTGAATACCGATACGCATATGCAACTGATTACTGGTCCAAACATGAGTGGTAAGTCTACCTATATGCGGC
AGTTGGCAGTTATCGTCATCATGGCGCAGATGGGTTCCTATGTGCCTGCGGATCAGGCTGAATTACCGATTTTCGATGCT
ATCTTCACCCGTATCGGTGCGGCAGATGATCTAGTCAGCGGTCAATCGACCTTCATGGTGGAGATGATGGAGGCCAACAA
GGCAGTCCGCTTGGCGACAGACCAGTCCCTAATTCTCTTTGATGAGCTGGGTCGGGGAACAGCCACTTACGACGGCATGG
CTCTGGCCCAGTCTATCATCGAGTATATCCACGACAAGATTGGAGCCAAGACCCTCTTTGCCACCCACTACCATGAGTTG
ACAGACCTTAGCCAGACCTTGGAACACTTAGAGAATGTCCATGTGTCGACCTTGGAGAAGGACGGTCAAGTCACCTTCCT
CCACAAGATTGCACAAGGCCCAGCTGACAAGTCCTACGGGATTCATGTGGCTAAGATTGCGGGAATGCCAGAGGAGCTAT
TGCAGCGGGCGGATAGGATTTTGCAGACGCTTGAAAACCAAGCCCCTACTGCACCAGCAAAACCAGCTCCATCAGTGGTG
GCAGAACCGTCTGGTCAAATCGACCTCTTTGCAGACACACCTTCTCACCCAGTCCTCAAAGAATTAGAAAAACTGGACAT
CTACAATATGACCCCAATGGAAGTCATGATGGCAGTGGCGGAGTTGAAGAAAAAAATATAA


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  hexA Streptococcus pneumoniae R6

73.641

100

0.736

  mutS Pseudomonas stutzeri strain ATCC 17587

37.631

100

0.383


Multiple sequence alignment