Detailed information    

insolico Bioinformatically predicted

Overview


Name   xerS   Type   Machinery gene
Locus tag   A7J09_RS05870 Genome accession   NZ_CP030015
Coordinates   1221967..1223037 (+) Length   356 a.a.
NCBI ID   WP_002935006.1    Uniprot ID   -
Organism   Streptococcus suis strain ISU2812     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context


Location: 1216967..1228037
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J09_RS05845 (A7J09_05950) - 1217688..1218020 (+) 333 WP_014735854.1 putative DNA-binding protein -
  A7J09_RS05850 (A7J09_05955) ffh 1218033..1219607 (+) 1575 WP_002935002.1 signal recognition particle protein -
  A7J09_RS05855 (A7J09_05960) - 1219801..1220469 (+) 669 WP_002935003.1 SatD family protein -
  A7J09_RS05860 (A7J09_05965) - 1220473..1221213 (+) 741 WP_009909823.1 DUF3307 domain-containing protein -
  A7J09_RS05865 (A7J09_05970) - 1221279..1221800 (+) 522 WP_002935005.1 AAA family ATPase -
  A7J09_RS05870 (A7J09_05975) xerS 1221967..1223037 (+) 1071 WP_002935006.1 tyrosine recombinase XerS Machinery gene
  A7J09_RS05875 (A7J09_05980) - 1223107..1224615 (-) 1509 WP_013730362.1 phosphoglucomutase -
  A7J09_RS05880 (A7J09_05985) - 1224691..1225632 (-) 942 WP_002935009.1 sensor histidine kinase -
  A7J09_RS05885 (A7J09_05990) braR 1225629..1226294 (-) 666 WP_029178420.1 DNA-binding response regulator Regulator
  A7J09_RS05890 (A7J09_05995) - 1226333..1226539 (-) 207 WP_370287028.1 type II toxin-antitoxin system RelE family toxin -
  A7J09_RS05895 (A7J09_06000) relB 1226580..1226819 (-) 240 WP_002935014.1 type II toxin-antitoxin system RelB family antitoxin -

Sequence


Protein


Download         Length: 356 a.a.        Molecular weight: 41545.71 Da        Isoelectric Point: 9.2257

>NTDB_id=257964 A7J09_RS05870 WP_002935006.1 1221967..1223037(+) (xerS) [Streptococcus suis strain ISU2812]
MRRELLLEKIDQLKEIMPWFVLEYYQSKLAVPYSFTTLYEYLKEYRRFFEWLQDSDLVSVERIADIPLDILEHLTKKDME
AFILYLRERPLLNANTTQNGVSQTTINRTLSALSSLFKYLTEEVENEQGEPYFYRNVMKKVSTKKKKETLAARAENIKQK
LFLGDETMEFLDYVDKEYQVNLSKRALSSFQKNKERDLAILALLLASGVRLSEAVNLDLRDVNLNMMIIEVTRKGGKRDS
VNVAGFAKPYLEAYMSIRQQRYKAEKTDTAFFLSEYRGLPNRIDASSIEKMVAKYSADFKIRVTPHKLRHTLATRLYDAT
KSQVLVSHQLGHANTQVTDLYTHIVNDEQKNALDQL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=257964 A7J09_RS05870 WP_002935006.1 1221967..1223037(+) (xerS) [Streptococcus suis strain ISU2812]
ATGAGACGCGAGTTATTACTAGAAAAAATTGATCAACTAAAAGAAATTATGCCTTGGTTTGTTCTGGAATATTATCAGTC
AAAATTGGCTGTGCCTTACAGTTTTACTACCTTATATGAATACTTGAAAGAATACCGTCGATTCTTTGAGTGGTTACAGG
ATTCGGATTTGGTATCTGTGGAACGGATTGCTGACATTCCTTTGGATATTCTGGAACATTTGACAAAAAAAGATATGGAA
GCCTTTATTCTTTATCTGCGGGAGCGTCCCTTGCTGAACGCCAATACCACGCAGAATGGTGTGTCGCAGACCACCATTAA
CCGTACCCTGTCGGCTCTTTCTAGTCTCTTCAAGTATTTAACCGAAGAAGTGGAAAATGAGCAGGGCGAGCCCTACTTCT
ACCGCAATGTCATGAAAAAGGTATCTACCAAGAAGAAGAAGGAAACCTTGGCAGCGCGGGCTGAGAACATCAAGCAAAAG
CTCTTTTTGGGCGATGAAACCATGGAGTTCTTGGACTATGTGGACAAGGAATACCAAGTCAATCTCTCTAAACGTGCCCT
CTCCTCTTTCCAGAAAAATAAGGAGCGAGATTTGGCGATTCTGGCACTTCTCTTGGCTTCTGGCGTCCGTCTGTCAGAAG
CGGTGAATTTGGATCTTCGAGATGTAAATCTCAATATGATGATTATCGAAGTAACCCGTAAGGGTGGTAAGCGGGACTCG
GTCAATGTGGCTGGGTTTGCTAAGCCCTATCTGGAAGCCTATATGAGCATCCGTCAGCAACGCTACAAGGCTGAAAAAAC
GGATACGGCCTTCTTCCTGTCCGAATACCGTGGTCTACCCAATCGTATCGATGCTTCTTCTATTGAAAAAATGGTTGCCA
AGTACTCTGCGGACTTCAAGATACGCGTAACCCCCCACAAACTCCGTCATACCTTGGCAACTCGCCTATACGACGCCACA
AAGTCGCAAGTTCTGGTCAGTCATCAGCTGGGCCACGCCAATACTCAGGTCACTGACCTCTACACCCATATAGTCAATGA
TGAGCAAAAAAATGCACTGGATCAATTATAG


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

82.865

100

0.829