Detailed information    

insolico Bioinformatically predicted

Overview

Name   pptB   Type   Regulator
Locus tag   A7J09_RS01445 Genome accession   NZ_CP030015
Coordinates   279965..281005 (+) Length   346 a.a.
NCBI ID   WP_013730555.1    Uniprot ID   -
Organism   Streptococcus suis strain ISU2812     
Function   export ComS (predicted from homology)   
Competence regulation

Genomic Context

Location: 274965..286005
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  A7J09_RS01415 (A7J09_01425) tsaE 276195..276635 (+) 441 WP_029174644.1 tRNA (adenosine(37)-N6)-threonylcarbamoyltransferase complex ATPase subunit type 1 TsaE -
  A7J09_RS01420 (A7J09_01430) - 276628..277155 (+) 528 WP_002939196.1 GNAT family N-acetyltransferase -
  A7J09_RS01425 (A7J09_01435) - 277152..278345 (+) 1194 WP_002939198.1 LCP family protein -
  A7J09_RS01430 (A7J09_01440) - 278454..278756 (-) 303 WP_002939199.1 hypothetical protein -
  A7J09_RS01435 (A7J09_01445) - 278758..279171 (-) 414 WP_002939203.1 HIT family protein -
  A7J09_RS01440 (A7J09_01450) pptA 279234..279968 (+) 735 WP_002939204.1 ABC transporter ATP-binding protein Regulator
  A7J09_RS01445 (A7J09_01455) pptB 279965..281005 (+) 1041 WP_013730555.1 ABC transporter permease Regulator
  A7J09_RS01450 (A7J09_01460) ccrZ 281055..281849 (+) 795 WP_013730554.1 cell cycle regulator CcrZ -
  A7J09_RS01455 (A7J09_01465) trmB 281846..282484 (+) 639 WP_002939002.1 tRNA (guanosine(46)-N7)-methyltransferase TrmB -
  A7J09_RS01460 (A7J09_01470) rimP 282742..283212 (+) 471 WP_002942369.1 ribosome maturation factor RimP -
  A7J09_RS01465 (A7J09_01475) nusA 283285..284427 (+) 1143 WP_004194726.1 transcription termination factor NusA -
  A7J09_RS01470 (A7J09_01480) rnpM 284444..284740 (+) 297 WP_002942375.1 RNase P modulator RnpM -
  A7J09_RS01475 (A7J09_01485) - 284697..285035 (+) 339 WP_043028741.1 YlxQ-related RNA-binding protein -
  A7J09_RS01480 - 285053..285170 (+) 118 Protein_259 translation initiation factor IF-2 N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 346 a.a.        Molecular weight: 40172.54 Da        Isoelectric Point: 10.0123

>NTDB_id=257942 A7J09_RS01445 WP_013730555.1 279965..281005(+) (pptB) [Streptococcus suis strain ISU2812]
MKELFQQRRLDFLNRCSKYLRYVLNDHFVLVLMVLLGFLSLQYRQLLLSFPENPLPIVFVVIAISLLVLVSGRIATYLEE
ADQIFLLTKEKDILQGLEVAARCTVLFWSSIQVVVQLVLLPIYLKLGLPVWMIVAGLLTLLVLKCLFVKRQLVAYQSQGV
LDWSKAIQDEQKRKQSILRFFALFTTVKGISTTVKPRSYLNGILRLVKSRQTWFYLYLRAFLRSGDYLGLTIRLLLLAIL
SLFAIEESWLSIGLVLVFHYLLVFQLLGLYKHYDYQYITQLYPLEKDSKKIGLQNLLRVILYSLLLVELGFALLFSKENT
MVVVLLLVGIFLHEIYLPLKLKKLID

Nucleotide


Download         Length: 1041 bp        

>NTDB_id=257942 A7J09_RS01445 WP_013730555.1 279965..281005(+) (pptB) [Streptococcus suis strain ISU2812]
ATGAAAGAATTGTTTCAACAACGCCGACTAGATTTTTTAAATCGTTGTTCCAAGTATCTGCGCTATGTTCTGAATGACCA
TTTTGTTTTGGTTCTCATGGTTTTATTAGGCTTTTTGAGTTTGCAATACCGTCAATTATTGTTGTCGTTCCCTGAGAATC
CGTTGCCGATTGTTTTTGTGGTTATTGCAATCAGTCTACTGGTACTAGTGTCCGGAAGAATTGCGACTTATCTAGAAGAA
GCTGATCAAATCTTCCTATTGACCAAGGAAAAAGACATTCTGCAAGGACTCGAGGTTGCAGCCAGATGCACGGTCTTGTT
TTGGTCCTCTATACAGGTGGTGGTTCAGCTTGTTTTGTTACCAATCTATTTGAAACTGGGTTTACCGGTGTGGATGATTG
TAGCTGGTCTTCTTACTTTGTTGGTTTTAAAATGTCTTTTTGTCAAGCGCCAATTAGTGGCTTATCAGTCACAGGGAGTA
TTGGACTGGTCTAAGGCTATTCAAGATGAACAAAAAAGGAAACAGTCTATTTTACGTTTCTTTGCCTTATTTACGACGGT
TAAAGGAATCAGTACGACTGTTAAACCGAGAAGCTATCTCAATGGAATCTTGCGTCTCGTCAAGTCGAGACAGACTTGGT
TTTATCTCTACTTACGGGCTTTCTTGCGTTCAGGAGACTACTTGGGCTTGACGATACGTCTACTGTTGTTGGCGATTTTG
TCCCTATTTGCCATTGAAGAATCGTGGTTATCCATCGGCCTAGTTTTAGTCTTTCATTATTTGCTTGTCTTTCAGTTGTT
GGGGCTTTACAAGCATTATGATTATCAATATATAACACAACTGTATCCTCTGGAGAAAGATTCCAAGAAAATTGGTCTTC
AGAATTTGCTTAGAGTGATTTTATATAGTCTATTACTGGTGGAATTGGGCTTTGCTCTGCTATTTTCTAAAGAGAATACG
ATGGTAGTCGTCTTACTTCTCGTGGGGATTTTCTTGCATGAAATATATTTGCCTCTAAAATTAAAAAAATTGATTGACTA
A

Domains

Predicted by InterProScan.

Bacterial ABC transporter protein EcsB (EcsB)

(154-329)

Bacterial ABC transporter protein EcsB (EcsB)

(2-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pptB Streptococcus salivarius strain HSISS4

45.739

100

0.465
  pptB Streptococcus thermophilus LMD-9

44.886

100

0.457