Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   ECP_RS19565 Genome accession   NC_008253
Coordinates   4021266..4021742 (+) Length   158 a.a.
NCBI ID   WP_001186726.1    Uniprot ID   -
Organism   Escherichia coli 536     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4016266..4026742
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECP_RS19530 (ECP_3850) - 4016935..4017819 (+) 885 WP_001116798.1 GTPase family protein -
  ECP_RS19540 (ECP_3851) - 4018022..4018702 (+) 681 WP_001282920.1 helix-turn-helix transcriptional regulator -
  ECP_RS19545 (ECP_3852) - 4018850..4019527 (+) 678 WP_001097308.1 hypothetical protein -
  ECP_RS19550 (ECP_3853) - 4019533..4019766 (+) 234 WP_001278287.1 DUF905 family protein -
  ECP_RS19555 (ECP_3854) - 4019856..4020674 (+) 819 WP_001175163.1 DUF932 domain-containing protein -
  ECP_RS19560 (ECP_3855) - 4020766..4021251 (+) 486 WP_000206652.1 antirestriction protein -
  ECP_RS19565 (ECP_3856) radC 4021266..4021742 (+) 477 WP_001186726.1 JAB domain-containing protein Machinery gene
  ECP_RS19570 (ECP_3857) - 4021805..4022026 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  ECP_RS19575 (ECP_3858) - 4022100..4022468 (+) 369 WP_011579284.1 type IV toxin-antitoxin system YeeU family antitoxin -
  ECP_RS19580 (ECP_3859) - 4022558..4022932 (+) 375 WP_000854725.1 TA system toxin CbtA family protein -
  ECP_RS19585 (ECP_3860) - 4022929..4023408 (+) 480 WP_000988603.1 DUF5983 family protein -
  ECP_RS19590 (ECP_3861) - 4023420..4023617 (+) 198 WP_000839274.1 DUF957 domain-containing protein -
  ECP_RS19595 (ECP_3862) - 4023701..4024546 (+) 846 WP_001280468.1 DUF4942 domain-containing protein -
  ECP_RS19605 (ECP_3864) - 4025139..4025507 (+) 369 WP_000509807.1 hypothetical protein -
  ECP_RS19610 (ECP_3865) yicL 4025804..4026727 (+) 924 WP_001351210.1 carboxylate/amino acid/amine transporter -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17673.32 Da        Isoelectric Point: 7.2020

>NTDB_id=25784 ECP_RS19565 WP_001186726.1 4021266..4021742(+) (radC) [Escherichia coli 536]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=25784 ECP_RS19565 WP_001186726.1 4021266..4021742(+) (radC) [Escherichia coli 536]
ATGCAACAGCTTTCCTTTCTGCCAGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment