Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0J   Type   Regulator
Locus tag   CWI26_RS11915 Genome accession   NZ_CP025043
Coordinates   2403147..2403911 (+) Length   254 a.a.
NCBI ID   WP_012775418.1    Uniprot ID   A0A0Z9LUD5
Organism   Streptococcus suis strain AH681     
Function   require for competence development (predicted from homology)   
Competence regulation

Genomic Context

Location: 2398147..2408911
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWI26_RS11875 (CWI26_11875) - 2398496..2398702 (+) 207 WP_002941576.1 hypothetical protein -
  CWI26_RS11880 (CWI26_11880) - 2398656..2400008 (+) 1353 WP_100881188.1 IS66-like element short variant transposase -
  CWI26_RS11900 (CWI26_11900) - 2400529..2401212 (-) 684 WP_024376049.1 YoaK family protein -
  CWI26_RS11905 (CWI26_11905) rlmH 2401237..2401716 (-) 480 WP_002941741.1 23S rRNA (pseudouridine(1915)-N(3))-methyltransferase RlmH -
  CWI26_RS11910 (CWI26_11910) htrA 2401890..2403086 (+) 1197 WP_024376048.1 S1C family serine protease Regulator
  CWI26_RS11915 (CWI26_11915) spo0J 2403147..2403911 (+) 765 WP_012775418.1 ParB/RepB/Spo0J family partition protein Regulator

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 28966.25 Da        Isoelectric Point: 9.4760

>NTDB_id=257634 CWI26_RS11915 WP_012775418.1 2403147..2403911(+) (spo0J) [Streptococcus suis strain AH681]
MEELRTLNISEIHPNPYQPRIHFDEKELLELAQSIKENGLIQPIIVRKSSIIGYELLAGERRLRASQLAGLTTIPAVVKE
LTDDDLLYQAIIENLQRSNLNPIEEAASYQKLISRGLTHDEVAQIMGKSRPYISNLLRLLNLSSQTKQAVEEGKISQGHA
RQLVSFSEEKQAEWVQLILSKDLSVRTLEKLIAANKKKHTKLKQRDQFLKEQEDSLSKTLGTATKIIKKKNGSGEIRISF
NDLDEFERIINNFK

Nucleotide


Download         Length: 765 bp        

>NTDB_id=257634 CWI26_RS11915 WP_012775418.1 2403147..2403911(+) (spo0J) [Streptococcus suis strain AH681]
ATGGAAGAATTACGTACACTAAATATTTCAGAAATCCATCCCAATCCCTATCAGCCAAGAATTCATTTTGATGAAAAGGA
GCTACTTGAGCTCGCTCAATCTATTAAGGAAAATGGCTTAATTCAACCGATTATTGTAAGAAAATCTTCTATTATCGGAT
ACGAATTATTAGCTGGAGAAAGAAGGTTGCGAGCCAGTCAATTAGCTGGACTGACTACAATACCAGCAGTGGTAAAGGAA
CTAACTGATGATGATTTACTCTATCAGGCTATCATAGAGAATCTACAGCGTTCTAACTTAAATCCGATAGAAGAAGCAGC
CTCTTATCAAAAATTGATTAGTAGAGGGTTAACGCATGATGAAGTTGCTCAAATCATGGGAAAATCAAGACCATATATCA
GTAATTTATTGCGCCTACTAAATCTATCATCTCAGACTAAACAAGCTGTAGAAGAAGGAAAAATTTCACAAGGGCACGCG
CGACAATTGGTGTCATTTTCAGAAGAAAAGCAAGCCGAATGGGTTCAACTCATTTTATCAAAAGATTTAAGTGTGCGTAC
GCTTGAAAAATTAATAGCTGCAAATAAGAAAAAACACACTAAGCTTAAACAACGCGACCAATTTTTAAAAGAACAGGAAG
ATTCACTCAGTAAAACTCTTGGAACAGCTACAAAAATTATCAAGAAGAAAAACGGGAGCGGAGAAATTCGGATTAGCTTT
AATGACCTCGATGAATTCGAAAGAATTATCAACAATTTTAAATAG

Domains

Predicted by InterproScan.

HTH domain found in ParB protein (HTH_ParB)

(146-193)

ParB/Sulfiredoxin domain (ParB_N)

(7-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A0Z9LUD5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0J Streptococcus mutans UA159

55.159

99.213

0.547

Multiple sequence alignment