Detailed information    

insolico Bioinformatically predicted

Overview

Name   oppA   Type   Regulator
Locus tag   CWI26_RS10185 Genome accession   NZ_CP025043
Coordinates   2054172..2055962 (-) Length   596 a.a.
NCBI ID   WP_024377881.1    Uniprot ID   -
Organism   Streptococcus suis strain AH681     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 2049172..2060962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CWI26_RS10160 (CWI26_10160) - 2049493..2049858 (-) 366 WP_002939192.1 Asp23/Gls24 family envelope stress response protein -
  CWI26_RS10165 (CWI26_10165) - 2049980..2050882 (-) 903 WP_002942329.1 ABC transporter permease -
  CWI26_RS10170 (CWI26_10170) opp4B 2050896..2051852 (-) 957 WP_002942327.1 oligopeptide ABC transporter permease -
  CWI26_RS10175 (CWI26_10175) - 2051854..2052795 (-) 942 WP_012027759.1 ATP-binding cassette domain-containing protein -
  CWI26_RS10180 (CWI26_10180) - 2052798..2053796 (-) 999 WP_002942324.1 ABC transporter ATP-binding protein -
  CWI26_RS10185 (CWI26_10185) oppA 2054172..2055962 (-) 1791 WP_024377881.1 oligopeptide ABC transporter substrate-binding protein Regulator
  CWI26_RS10190 (CWI26_10190) pbp3 2056177..2057418 (+) 1242 WP_099780208.1 D-alanyl-D-alanine carboxypeptidase PBP3 -
  CWI26_RS10195 (CWI26_10195) sufB 2057603..2059018 (-) 1416 WP_002938151.1 Fe-S cluster assembly protein SufB -
  CWI26_RS10200 (CWI26_10200) sufU 2059428..2059868 (-) 441 WP_100881705.1 Fe-S cluster assembly sulfur transfer protein SufU -

Sequence

Protein


Download         Length: 596 a.a.        Molecular weight: 65608.38 Da        Isoelectric Point: 4.4943

>NTDB_id=257627 CWI26_RS10185 WP_024377881.1 2054172..2055962(-) (oppA) [Streptococcus suis strain AH681]
MKKTTKLFALAGVTLLSASVLAACGSKQSGAAKQELSFPSEVKQDGTAVADAQLKYAFVSATTSSGLLIDELTENTTDST
FGGMVDISMFGYDGDRKLDDSGLAKAEFDVKGKKITVSLTGKDYKWSDGEPFTINDYIFTIKSMASKDYTGVRFDDKFLN
IVGMDEFVAGTASDISGLKKIDDYTVELTVKEMSPSMMYAGGDVPAYIQPEHIYKDIPVADWEKSEYSRTAKLVGMGPWK
IKEIVNGESITYVPNEYFFKGTTPKTSSLKIDIVSPDTIVSEMKAGNYDIADMPVDQLDSYKDASNLNIVGSLDSAYEYI
SFNFGKYDESAKKNVMDENAKMNDVKLRQAIAYAIDTKTAGESLYNGLYHPANSLIISFFGDIHDSELEGYSYDPEKAKK
LLEEAGYKDVDGDGIREGKDGKEFKITFAARKRTEANEALVQQYIAWWKEVGLNVELYTGRTVEGKSFYNSVQANDAAID
MYAGGWSTGYDPNPTGLWGPIAAFNMSRFVSDENTKLLNAISSTESFDDKKNVENYKAWQKYAHEQAFAIPTFESESITA
LNKRVKNYDSNYGSASGKGIAFENIELTADKGVVAE

Nucleotide


Download         Length: 1791 bp        

>NTDB_id=257627 CWI26_RS10185 WP_024377881.1 2054172..2055962(-) (oppA) [Streptococcus suis strain AH681]
ATGAAAAAGACAACGAAACTTTTTGCACTTGCAGGTGTGACTCTCCTTTCAGCATCTGTTCTTGCAGCATGTGGTTCAAA
ACAATCAGGTGCAGCAAAACAGGAATTGTCATTCCCATCTGAAGTAAAACAAGATGGAACAGCAGTCGCAGATGCTCAAT
TGAAATATGCATTTGTTTCAGCTACAACTTCATCAGGTCTCTTGATTGACGAGTTGACTGAAAACACAACTGACTCAACA
TTTGGTGGAATGGTTGATATTTCAATGTTTGGTTACGATGGAGATCGTAAGTTAGATGATTCTGGTCTTGCTAAAGCTGA
ATTTGATGTAAAAGGTAAGAAAATCACTGTTAGTTTGACAGGTAAAGATTACAAGTGGTCAGATGGTGAGCCATTTACAA
TCAATGACTACATCTTTACTATCAAGTCAATGGCAAGCAAAGACTATACAGGTGTTCGTTTTGACGATAAATTCTTGAAC
ATTGTGGGTATGGATGAATTTGTTGCTGGAACAGCTTCAGATATCTCAGGTCTTAAGAAAATTGATGACTACACAGTAGA
ATTGACTGTAAAAGAAATGTCACCTTCTATGATGTATGCCGGTGGTGATGTACCTGCCTATATCCAACCAGAACATATCT
ATAAAGACATCCCTGTTGCAGATTGGGAAAAGAGCGAGTACTCACGTACAGCTAAACTTGTTGGTATGGGACCTTGGAAA
ATCAAGGAAATCGTAAACGGTGAGTCTATCACTTATGTACCAAACGAATACTTCTTCAAAGGTACAACGCCAAAAACAAG
CTCATTGAAGATTGACATCGTATCTCCAGATACTATTGTTTCTGAAATGAAAGCTGGTAACTATGACATCGCAGATATGC
CTGTTGACCAGTTGGATTCATACAAGGATGCTTCTAACTTGAATATCGTTGGTTCTTTGGACTCAGCTTATGAATACATT
TCATTTAATTTTGGTAAATATGACGAGTCTGCTAAGAAAAACGTCATGGATGAAAATGCTAAGATGAATGATGTGAAACT
TCGTCAAGCGATTGCCTATGCGATTGATACTAAGACAGCTGGTGAGTCATTGTACAATGGTCTTTACCACCCTGCAAACT
CATTGATTATCTCATTCTTCGGCGATATTCATGATTCAGAGTTGGAAGGCTATTCATACGATCCTGAAAAAGCGAAAAAA
CTCTTGGAAGAAGCTGGCTACAAAGACGTAGATGGCGATGGTATCCGTGAAGGTAAAGATGGTAAAGAATTCAAGATTAC
CTTTGCTGCTCGTAAACGTACGGAAGCTAACGAAGCGCTCGTACAACAATACATTGCTTGGTGGAAAGAAGTTGGCTTGA
ATGTCGAACTTTACACAGGACGTACAGTTGAAGGTAAGTCGTTCTATAACTCAGTTCAGGCTAATGATGCTGCTATTGAT
ATGTATGCTGGTGGATGGTCTACTGGTTACGATCCAAACCCAACAGGACTTTGGGGTCCAATCGCAGCCTTCAACATGTC
ACGTTTCGTGTCTGATGAAAATACTAAGTTGTTGAATGCAATCAGCTCAACAGAATCATTTGACGATAAGAAAAATGTTG
AGAACTATAAGGCTTGGCAAAAATATGCTCACGAGCAAGCATTTGCTATTCCAACATTTGAATCTGAGTCAATCACAGCC
CTTAACAAACGTGTGAAAAACTATGATTCTAACTATGGCTCAGCTTCAGGTAAAGGTATCGCTTTTGAAAATATCGAACT
TACAGCTGATAAAGGTGTAGTAGCAGAATAG

Domains

Predicted by InterproScan.

Bacterial extracellular solute-binding proteins, family 5 Middle (SBP_bac_5)

(103-499)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  oppA Streptococcus suis isolate S10

93.96

100

0.94

Multiple sequence alignment