Detailed information    

insolico Bioinformatically predicted

Overview

Name   comL   Type   Machinery gene
Locus tag   ECP_RS13295 Genome accession   NC_008253
Coordinates   2744011..2744748 (+) Length   245 a.a.
NCBI ID   WP_000197692.1    Uniprot ID   -
Organism   Escherichia coli 536     
Function   DNA binding (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2739011..2749748
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  ECP_RS13280 (ECP_2595) clpC 2739465..2742038 (-) 2574 WP_001235102.1 ATP-dependent chaperone ClpB Regulator
  ECP_RS13285 (ECP_2596) yfiH 2742168..2742899 (-) 732 WP_000040138.1 purine nucleoside phosphorylase YfiH -
  ECP_RS13290 (ECP_2597) rluD 2742896..2743876 (-) 981 WP_000079112.1 23S rRNA pseudouridine(1911/1915/1917) synthase RluD -
  ECP_RS13295 (ECP_2598) comL 2744011..2744748 (+) 738 WP_000197692.1 outer membrane protein assembly factor BamD Machinery gene
  ECP_RS13305 (ECP_2599) raiA 2745018..2745359 (+) 342 WP_000178456.1 ribosome-associated translation inhibitor RaiA -
  ECP_RS26980 pheL 2745463..2745510 (+) 48 WP_001386991.1 pheA operon leader peptide PheL -
  ECP_RS13310 (ECP_2600) pheA 2745609..2746769 (+) 1161 WP_000200106.1 bifunctional chorismate mutase/prephenate dehydratase -
  ECP_RS13315 (ECP_2601) tyrA 2746812..2747933 (-) 1122 WP_000225234.1 bifunctional chorismate mutase/prephenate dehydrogenase -
  ECP_RS13320 (ECP_2602) aroF 2747944..2749014 (-) 1071 WP_001168045.1 3-deoxy-7-phosphoheptulonate synthase AroF -
  ECP_RS13325 (ECP_2603) yfiL 2749224..2749589 (+) 366 WP_001298694.1 DUF2799 domain-containing protein -

Sequence

Protein


Download         Length: 245 a.a.        Molecular weight: 27928.53 Da        Isoelectric Point: 7.1589

>NTDB_id=25757 ECP_RS13295 WP_000197692.1 2744011..2744748(+) (comL) [Escherichia coli 536]
MTRMKYLVAAATLSLFLAGCSGSKEEVPDNPPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYY
KNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMALDDSALQRFFGVDRSDRDPQHARAAFSDFSKLVRGYPNSQYT
TDATKRLVFLKDRLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAA
NSSNT

Nucleotide


Download         Length: 738 bp        

>NTDB_id=25757 ECP_RS13295 WP_000197692.1 2744011..2744748(+) (comL) [Escherichia coli 536]
ATGACGCGCATGAAATATCTGGTGGCAGCCGCCACACTAAGCCTGTTTTTGGCGGGTTGCTCGGGGTCAAAGGAAGAAGT
ACCTGATAATCCGCCAAATGAAATTTACGCGACTGCACAACAAAAGCTGCAGGACGGTAACTGGAGACAGGCAATAACGC
AACTGGAAGCGTTAGATAATCGCTATCCGTTTGGTCCGTATTCGCAGCAGGTGCAGCTGGATCTCATCTACGCCTACTAT
AAAAACGCCGATTTGCCGTTAGCACAGGCTGCCATCGATCGTTTTATTCGCCTTAACCCGACCCATCCGAATATCGATTA
TGTCATGTACATGCGTGGCCTGACCAATATGGCGCTGGATGACAGTGCGCTGCAAAGGTTCTTTGGCGTTGACCGTAGCG
ATCGCGATCCTCAACATGCACGAGCTGCGTTTAGTGACTTTTCCAAACTGGTGCGCGGCTATCCGAACAGTCAGTACACC
ACCGATGCCACCAAACGTCTGGTATTCCTGAAAGATCGTCTGGCGAAATATGAATACTCCGTGGCCGAGTATTATACAGA
ACGTGGTGCATGGGTTGCTGTCGTTAACCGCGTAGAAGGCATGTTGCGCGACTATCCGGATACCCAGGCTACGCGTGATG
CGCTGCCGCTGATGGAAAATGCATACCGTCAGATGCAGATGAATGCGCAAGCTGAAAAAGTAGCGAAAATCATCGCCGCA
AACAGCAGCAATACATAA

Domains

Predicted by InterProScan.

Outer membrane lipoprotein (YfiO)

(28-236)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comL Neisseria meningitidis MC58

38.525

99.592

0.384
  comL Neisseria gonorrhoeae MS11

37.705

99.592

0.376

Multiple sequence alignment