Detailed information    

insolico Bioinformatically predicted

Overview

Name   kpsS   Type   Regulator
Locus tag   BEN53_RS18360 Genome accession   NZ_CP029747
Coordinates   3611433..3612653 (-) Length   406 a.a.
NCBI ID   WP_000794251.1    Uniprot ID   -
Organism   Escherichia coli strain 2016C-3878     
Function   repress natural transformation (predicted from homology)   
Competence regulation

Genomic Context

Location: 3606433..3617653
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN53_RS18300 (BEN53_18300) - 3606521..3606976 (+) 456 WP_000581502.1 IrmA family protein -
  BEN53_RS18305 (BEN53_18305) - 3607077..3607248 (+) 172 Protein_3418 DUF905 family protein -
  BEN53_RS18315 (BEN53_18315) - 3607366..3608184 (+) 819 WP_001234593.1 DUF932 domain-containing protein -
  BEN53_RS18320 (BEN53_18320) - 3608276..3608761 (+) 486 WP_000214310.1 antirestriction protein -
  BEN53_RS18325 (BEN53_18325) radC 3608777..3609253 (+) 477 WP_001186725.1 RadC family protein Machinery gene
  BEN53_RS18330 (BEN53_18330) yeeT 3609322..3609543 (+) 222 WP_000692300.1 DUF987 domain-containing protein -
  BEN53_RS18335 (BEN53_18335) cbeA 3609617..3609985 (+) 369 WP_001285590.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  BEN53_RS18340 (BEN53_18340) cbtA 3610074..3610451 (+) 378 WP_000854811.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  BEN53_RS18345 (BEN53_18345) - 3610448..3610878 (+) 431 Protein_3425 DUF5983 family protein -
  BEN53_RS18350 (BEN53_18350) - 3610895..3611071 (+) 177 WP_000839288.1 DUF957 domain-containing protein -
  BEN53_RS18355 (BEN53_18355) - 3611177..3611407 (+) 231 Protein_3427 hypothetical protein -
  BEN53_RS18360 (BEN53_18360) kpsS 3611433..3612653 (-) 1221 WP_000794251.1 capsular biosynthesis protein Regulator
  BEN53_RS18365 (BEN53_18365) - 3613816..3615963 (-) 2148 WP_000281770.1 capsular polysaccharide biosynthesis protein -
  BEN53_RS18370 (BEN53_18370) rfbC 3616013..3616564 (-) 552 WP_001100778.1 dTDP-4-dehydrorhamnose 3,5-epimerase -
  BEN53_RS18375 (BEN53_18375) rfbA 3616630..3617508 (-) 879 WP_000166786.1 glucose-1-phosphate thymidylyltransferase RfbA -

Sequence

Protein


Download         Length: 406 a.a.        Molecular weight: 48437.92 Da        Isoelectric Point: 10.1710

>NTDB_id=257481 BEN53_RS18360 WP_000794251.1 3611433..3612653(-) (kpsS) [Escherichia coli strain 2016C-3878]
MKNNALSILLSGKKYLLLQGPMGPFFNDVAEWLESLGRNAVNVVFNGGDRFYCRHRHYLAYYQTPKEFPGWLRDIHRQFD
FDTILCFGDCRPLHKEAKRWAKSKGIRFLAFEEGYLRPQFITVEEDGVNAYSSLPRDPDFYRKLPDMPAPHVENLKPSTM
KRIGHAMWYYLMGWHYRHEFTRYRHHKSFSPWYEARCWGRAYWRKLFYKIMQRNVLARLVNDLDQRYYLVILQVYNDSQI
RNHSNYNDVRDYINEVVYSFSHKAPKESYLVIKHHPMDRGHRLYRPLIKRLSKEYGLGERVIYVHDLPMPELLRHAKAVV
TINSTVGISALIHNKPLKVMGNALYDIKGLTYQGHLHQFWQADFKPDMKLFKKFREYLLMKTQINAVYYGVKSKSNRRSA
FLNGSR

Nucleotide


Download         Length: 1221 bp        

>NTDB_id=257481 BEN53_RS18360 WP_000794251.1 3611433..3612653(-) (kpsS) [Escherichia coli strain 2016C-3878]
ATGAAAAATAATGCTCTGAGCATTTTATTATCTGGTAAAAAATATCTGCTATTGCAGGGACCGATGGGACCTTTCTTCAA
TGATGTTGCCGAGTGGTTAGAGTCATTAGGTCGTAACGCTGTGAATGTTGTATTCAATGGAGGAGATCGTTTTTACTGCC
GTCATCGACACTATCTGGCTTATTACCAAACGCCGAAAGAATTTCCTGGTTGGTTACGAGATATCCACCGGCAATTTGAC
TTTGATACCATTCTCTGTTTTGGTGACTGCCGTCCATTGCACAAAGAAGCAAAACGTTGGGCGAAGTCTAAAGGGATCCG
CTTTCTGGCATTTGAAGAAGGATATTTACGTCCGCAATTTATTACTGTTGAAGAGGACGGTGTAAACGCGTATTCATCGC
TGCCGCGCGATCCTGACTTTTATCGTAAATTACCAGATATGCCTGCACCACATGTTGAGAACTTAAAACCCTCGACGATG
AAACGTATTGGTCATGCAATGTGGTATTACCTGATGGGATGGCATTACCGACATGAATTCACTCGCTACCGTCATCACAA
ATCATTTTCTCCTTGGTATGAGGCTCGTTGCTGGGGGCGTGCGTACTGGCGTAAGCTATTTTACAAAATAATGCAACGTA
ATGTATTGGCTCGGTTAGTGAATGATCTGGACCAACGTTACTATCTTGTTATTTTACAAGTTTATAATGATAGCCAAATT
CGTAATCACAGTAATTATAATGATGTGCGTGATTATATTAACGAAGTTGTATATTCATTTTCGCATAAGGCACCGAAAGA
GAGTTATTTGGTGATCAAACACCATCCGATGGATCGCGGTCACAGACTCTATCGACCATTAATTAAGCGGTTGAGTAAGG
AATATGGCTTAGGCGAGCGAGTCATATACGTACACGATCTCCCAATGCCGGAATTATTACGCCATGCAAAAGCGGTTGTG
ACAATTAACAGTACAGTGGGGATCTCTGCACTGATTCATAACAAACCACTCAAAGTGATGGGTAATGCTCTGTACGACAT
CAAGGGGTTGACGTATCAAGGGCATTTGCACCAATTCTGGCAGGCCGATTTTAAACCAGATATGAAACTGTTTAAGAAGT
TTCGTGAATATTTATTGATGAAGACGCAAATTAATGCTGTTTATTATGGTGTAAAATCAAAAAGCAATAGAAGGTCCGCA
TTCCTAAACGGTAGCAGATGA

Domains

Predicted by InterProScan.

Capsule polysaccharide biosynthesis protein (Capsule_synth)

(83-389)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  kpsS Campylobacter jejuni subsp. jejuni NCTC 11168 = ATCC 700819

39.846

95.813

0.382

Multiple sequence alignment