Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   BEN53_RS18325 Genome accession   NZ_CP029747
Coordinates   3608777..3609253 (+) Length   158 a.a.
NCBI ID   WP_001186725.1    Uniprot ID   -
Organism   Escherichia coli strain 2016C-3878     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3603777..3614253
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  BEN53_RS18295 (BEN53_18295) - 3603930..3606445 (+) 2516 Protein_3416 hypothetical protein -
  BEN53_RS18300 (BEN53_18300) - 3606521..3606976 (+) 456 WP_000581502.1 IrmA family protein -
  BEN53_RS18305 (BEN53_18305) - 3607077..3607248 (+) 172 Protein_3418 DUF905 family protein -
  BEN53_RS18315 (BEN53_18315) - 3607366..3608184 (+) 819 WP_001234593.1 DUF932 domain-containing protein -
  BEN53_RS18320 (BEN53_18320) - 3608276..3608761 (+) 486 WP_000214310.1 antirestriction protein -
  BEN53_RS18325 (BEN53_18325) radC 3608777..3609253 (+) 477 WP_001186725.1 RadC family protein Machinery gene
  BEN53_RS18330 (BEN53_18330) yeeT 3609322..3609543 (+) 222 WP_000692300.1 DUF987 domain-containing protein -
  BEN53_RS18335 (BEN53_18335) cbeA 3609617..3609985 (+) 369 WP_001285590.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  BEN53_RS18340 (BEN53_18340) cbtA 3610074..3610451 (+) 378 WP_000854811.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  BEN53_RS18345 (BEN53_18345) - 3610448..3610878 (+) 431 Protein_3425 DUF5983 family protein -
  BEN53_RS18350 (BEN53_18350) - 3610895..3611071 (+) 177 WP_000839288.1 DUF957 domain-containing protein -
  BEN53_RS18355 (BEN53_18355) - 3611177..3611407 (+) 231 Protein_3427 hypothetical protein -
  BEN53_RS18360 (BEN53_18360) kpsS 3611433..3612653 (-) 1221 WP_000794251.1 capsular biosynthesis protein Regulator

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17660.32 Da        Isoelectric Point: 7.2020

>NTDB_id=257480 BEN53_RS18325 WP_001186725.1 3608777..3609253(+) (radC) [Escherichia coli strain 2016C-3878]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=257480 BEN53_RS18325 WP_001186725.1 3608777..3609253(+) (radC) [Escherichia coli strain 2016C-3878]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGTCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAGTTCCGGGTACTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCCGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACCCCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAGTCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.752

71.519

0.399