Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   AM489_RS04890 Genome accession   NZ_CP029745
Coordinates   1023863..1024537 (+) Length   224 a.a.
NCBI ID   WP_003096559.1    Uniprot ID   Q02E43
Organism   Pseudomonas aeruginosa strain AR_0110     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1018863..1029537
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AM489_RS04875 (AM489_04875) - 1019409..1022015 (-) 2607 WP_021205352.1 phosphomannomutase/phosphoglucomutase -
  AM489_RS04880 (AM489_04880) dut 1022052..1022507 (-) 456 WP_003098293.1 dUTP diphosphatase -
  AM489_RS04885 (AM489_04885) coaBC 1022515..1023723 (-) 1209 WP_003114358.1 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC -
  AM489_RS04890 (AM489_04890) radC 1023863..1024537 (+) 675 WP_003096559.1 RadC family protein Machinery gene
  AM489_RS04895 (AM489_04895) - 1024554..1025102 (-) 549 WP_003098290.1 hypothetical protein -
  AM489_RS04900 (AM489_04900) - 1025128..1026708 (-) 1581 WP_003117158.1 ABC transporter substrate-binding protein -
  AM489_RS04905 (AM489_04905) rpmB 1027063..1027299 (+) 237 WP_003096556.1 50S ribosomal protein L28 -
  AM489_RS04910 (AM489_04910) rpmG 1027311..1027466 (+) 156 WP_003096555.1 50S ribosomal protein L33 -
  AM489_RS04915 (AM489_04915) - 1027600..1027962 (-) 363 WP_003096551.1 cupin domain-containing protein -
  AM489_RS04920 (AM489_04920) - 1028029..1029363 (-) 1335 WP_003161156.1 aspartate aminotransferase family protein -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24918.68 Da        Isoelectric Point: 7.2089

>NTDB_id=257347 AM489_RS04890 WP_003096559.1 1023863..1024537(+) (radC) [Pseudomonas aeruginosa strain AR_0110]
MSIRDWPEAERPREKLLEQGAAALSDAELLAIFLRTGVTGCSAVELSRRLLSEFGGLRALLEADLASFCGHLGLGVAKYA
QLQAVLEMGRRHLAERLRRDSILESPQAVRDYLKARLRHEQHEVFACLFLDTRHRVLAFEVLFQGSIDGASVYPRQVVKR
TLAHNAAALILTHNHPSGDARPSLADRQLTARLKEALALIDVRVLDHFIIGDGEPLSLAEYGWL

Nucleotide


Download         Length: 675 bp        

>NTDB_id=257347 AM489_RS04890 WP_003096559.1 1023863..1024537(+) (radC) [Pseudomonas aeruginosa strain AR_0110]
ATGAGCATCCGCGATTGGCCCGAAGCCGAACGGCCTCGGGAGAAGCTTCTGGAGCAGGGCGCGGCGGCCCTTTCCGATGC
CGAGCTGTTGGCGATCTTCCTGCGCACGGGAGTGACCGGTTGTAGTGCGGTCGAGCTGTCGCGGCGGCTGTTGAGCGAGT
TCGGCGGGCTGCGTGCCCTGCTCGAGGCGGACCTCGCCTCGTTCTGCGGCCATCTCGGGCTCGGCGTGGCCAAGTATGCG
CAATTGCAGGCCGTGCTGGAGATGGGCCGGCGCCACCTGGCCGAGCGCCTGCGTCGCGATTCGATACTGGAGAGCCCGCA
GGCGGTGCGCGACTATCTCAAGGCGCGCCTGCGCCACGAGCAGCACGAGGTGTTCGCCTGCCTGTTCCTCGACACGAGGC
ACCGGGTCCTGGCGTTCGAGGTGCTGTTCCAGGGCAGCATCGATGGCGCCAGCGTCTACCCGCGCCAGGTGGTCAAGCGC
ACCCTGGCGCACAACGCGGCGGCGCTGATCCTGACCCATAACCACCCCTCCGGCGACGCCCGTCCGAGTCTCGCCGACCG
CCAGCTCACTGCGCGCCTCAAGGAAGCCTTGGCGCTCATCGACGTGCGGGTGCTCGACCACTTCATCATCGGCGACGGCG
AGCCGCTGTCGCTGGCCGAATACGGTTGGCTGTGA

Domains

Predicted by InterProScan.

UPF0758 N-terminal (UPF0758_N)

(3-80)

RadC-like JAB domain (RadC)

(104-222)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q02E43

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

49.761

93.304

0.464
  ysxA/radC Bacillus subtilis subsp. subtilis str. 168

39.732

100

0.397

Multiple sequence alignment